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  • NDUFA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:530.0 nTPM
HPA Brain:153.4 nTPM
GTEx:530.0 nTPM
FANTOM5:138.5 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:411.4 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.4
Sample id Sample description nTPM
Amygdala
nTPM: 153.4
2814 Male, age 76, right hemisphere 191.3
2695 Female, age 67, right hemisphere 153.4
2514 Male, age 75, right hemisphere 153.3
1987 Female, age 91, left hemisphere 137.8
2517 Female, age 94, left hemisphere 131.1
Basal amygdala
nTPM: 121.1
2609 Male, age 75, right hemisphere 137.5
1955 Male, age 76, both hemispheres 134.9
2243 Female, age 91, right hemisphere 133.7
2110 Male, age 80, left hemisphere 132.1
2685 Female, age 94, left hemisphere 105.9
2827 Female, age 67, right hemisphere 82.4
Central amygdala
nTPM: 136.5
1905 Male, age 76, both hemispheres 169.0
2826 Female, age 94, left hemisphere 140.9
2515 Male, age 75, right hemisphere 132.0
2701 Female, age 91, right hemisphere 123.5
2239 Male, age 80, left hemisphere 117.0
Corticomedial amygdala
nTPM: 125.1
2829 Male, age 80, left hemisphere 152.1
2428 Male, age 75, right hemisphere 143.9
2242 Female, age 91, right hemisphere 136.5
2429 Female, age 94, left hemisphere 131.6
2240 Male, age 76, both hemispheres 111.7
2535 Female, age 67, right hemisphere 75.1
Lateral amygdala
nTPM: 114.8
1883 Male, age 76, both hemispheres 155.1
2534 Female, age 94, left hemisphere 132.1
2516 Male, age 75, right hemisphere 129.6
2830 Female, age 67, right hemisphere 92.0
2255 Female, age 91, right hemisphere 91.8
2256 Male, age 80, left hemisphere 88.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

530.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 530.0
Samples: 181

Max nTPM: 1735.9
Min nTPM: 286.8
Std nTPM: 187.6
Median nTPM: 490.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1735.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1451.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1169.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1052.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1036.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1035.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 983.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 886.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 806.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 797.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 783.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 780.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 774.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 771.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 758.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 749.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 740.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 736.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 729.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 726.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 716.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 710.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 691.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 691.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 687.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 684.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 673.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 664.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 652.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 651.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 648.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 645.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 641.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 627.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 625.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 624.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 614.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 613.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 608.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 600.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 595.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 592.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 588.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 588.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 586.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 584.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 582.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 576.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 573.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 573.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 568.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 567.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 560.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 556.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 556.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 556.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 553.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 551.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 547.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 546.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 544.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 542.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 537.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 537.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 531.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 529.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 528.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 525.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 525.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 524.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 524.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 522.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 520.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 519.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 518.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 515.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 515.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 514.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 510.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 510.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 508.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 508.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 507.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 502.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 501.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 499.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 498.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 496.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 495.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 495.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 490.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 488.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 488.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 485.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 485.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 483.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 482.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 481.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 478.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 473.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 471.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 465.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 464.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 462.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 462.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 460.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 460.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 460.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 458.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 457.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 456.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 455.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 453.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 450.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 448.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 446.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 444.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 444.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 444.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 443.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 443.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 439.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 435.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 433.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 430.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 426.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 424.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 424.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 424.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 423.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 422.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 420.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 419.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 416.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 414.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 413.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 413.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 411.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 411.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 410.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 408.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 408.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 406.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 405.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 403.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 401.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 396.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 396.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 395.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 395.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 391.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 391.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 390.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 388.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 383.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 381.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 379.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 379.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 376.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 372.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 372.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 371.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 368.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 368.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 363.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 357.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 356.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 351.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 350.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 349.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 347.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 346.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 337.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 335.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 332.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 330.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 324.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 316.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 302.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 301.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 286.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 138.5
FF:10151-102I7 76 years, female 138.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.6
Pig sample Sample description nTPM
Amygdala
nTPM: 62.6
Samples: 4

Max nTPM: 81.9
Min nTPM: 43.4
Sample A Female 81.9
Sample B Female 65.9
Sample C Male 59.3
Sample D Male 43.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 411.4
Samples: 4

Max nTPM: 489.2
Min nTPM: 374.2
Sample A Male 374.2
Sample B Male 385.0
Sample C Female 489.2
Sample D Female 397.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71763492 Antisense, RP_050921_02_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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