MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:496.6 nTPM
HPA Brain:154.6 nTPM
GTEx:496.6 nTPM
FANTOM5:142.8 Scaled Tags Per Million
Pig:133.9 nTPM
Mouse:372.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 154.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.3
2411 Female, age 72, unknown 151.4
1827 Male, age 72, unknown 150.0
2019 Male, age 18, unknown 139.3
1870 Female, age 42, unknown 138.9
2828 Female, age 72, unknown 126.8
2219 Male, age 76, both hemispheres 123.9
1833 Male, age 53, unknown 115.0
2666 Male, age 74, left hemisphere 114.3
1830 Male, age 51, unknown 103.7
2586 Male, age 75, left hemisphere 90.0
Dorsal raphe nucleus
nTPM: 142.6
2298 Female, age 72, unknown 177.2
1828 Male, age 53, unknown 144.2
2750 Male, age 76, both hemispheres 140.1
2047 Male, age 72, unknown 131.5
2016 Female, age 72, unknown 120.2
Inferior colliculus
nTPM: 145.9
2097 Female, age 72, unknown 163.8
1890 Male, age 53, unknown 155.4
1848 Female, age 42, unknown 132.3
2849 Male, age 72, unknown 132.0
Median raphe nucleus
nTPM: 141.1
2220 Male, age 76, midline 141.1
Periaquaductal grey, anterior
nTPM: 132.7
1947 Male, age 18, unknown 142.7
1795 Male, age 51, unknown 129.5
2502 Female, age 75, unknown 126.0
Periaquaductal grey, dorsal
nTPM: 131.6
2850 Male, age 76, both hemispheres 143.6
1840 Male, age 53, unknown 140.3
2464 Female, age 72, unknown 121.7
1831 Male, age 72, unknown 120.9
Periaquaductal grey, lateral
nTPM: 121.4
2272 Male, age 74, both hemispheres 128.2
2140 Male, age 76, both hemispheres 122.7
2053 Male, age 18, unknown 113.4
Pretectal area
nTPM: 153.9
1816 Male, age 51, unknown 191.3
2007 Male, age 72, unknown 190.3
1817 Female, age 42, unknown 189.2
1944 Female, age 72, unknown 184.2
1815 Male, age 53, unknown 159.6
2667 Female, age 75, unknown 155.6
2273 Male, age 74, both hemispheres 143.2
2224 Female, age 72, unknown 135.6
2825 Male, age 18, unknown 120.5
2316 Male, age 76, right hemisphere 114.8
2407 Male, age 75, both hemispheres 108.6
Red nucleus
nTPM: 136.8
1821 Female, age 72, unknown 172.9
2823 Male, age 76, right hemisphere 151.5
2503 Female, age 72, unknown 150.3
2785 Male, age 18, unknown 146.5
2769 Male, age 72, unknown 141.6
1865 Male, age 51, unknown 141.4
2227 Male, age 72, unknown 139.2
1954 Female, age 42, unknown 137.5
2725 Female, age 75, unknown 132.4
1904 Male, age 53, unknown 119.6
2588 Male, age 74, left hemisphere 111.6
2584 Male, age 75, left hemisphere 97.7
Substantia nigra
nTPM: 154.6
1889 Female, age 72, unknown 190.5
1916 Female, age 42, unknown 187.5
1941 Male, age 53, unknown 169.0
1851 Male, age 51, unknown 167.1
2699 Male, age 18, unknown 151.1
2409 Female, age 72, unknown 148.4
2590 Female, age 75, unknown 147.7
2665 Male, age 74, both hemispheres 147.1
2241 Male, age 72, unknown 136.4
2583 Male, age 75, right hemisphere 101.1
Superior colliculus
nTPM: 133.1
1895 Male, age 76, right hemisphere 162.2
2087 Female, age 72, unknown 151.3
2668 Female, age 75, unknown 142.1
2587 Male, age 74, left hemisphere 141.3
1796 Male, age 53, unknown 140.6
2261 Male, age 18, unknown 136.1
1913 Female, age 42, unknown 123.2
1995 Male, age 72, unknown 115.4
1839 Male, age 51, unknown 114.2
2664 Male, age 75, both hemispheres 104.4
Ventral tegmental area
nTPM: 143.0
2410 Female, age 72, unknown 168.0
2218 Male, age 76, both hemispheres 156.9
1915 Female, age 42, unknown 154.2
1942 Male, age 51, unknown 138.0
2223 Female, age 72, unknown 122.0
2021 Male, age 53, unknown 118.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 496.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 496.6
Samples: 183

Max nTPM: 883.5
Min nTPM: 274.4
Std nTPM: 114.5
Median nTPM: 480.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 883.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 880.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 847.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 823.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 745.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 744.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 718.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 717.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 694.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 689.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 688.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 142.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.8
FF:10158-103A5 76 years, female 142.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 133.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 100.4
Samples: 4

Max nTPM: 144.3
Min nTPM: 79.0
Sample A Female 144.3
Sample B Female 87.2
Sample C Male 91.0
Sample D Male 79.0
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 124.6
Min nTPM: 92.3
Sample A Female 111.1
Sample B Female 97.2
Sample C Male 124.6
Sample D Male 92.3
Periaqueductal gray
nTPM: 84.8
Samples: 3

Max nTPM: 88.8
Min nTPM: 80.0
Sample B Female 85.6
Sample C Male 88.8
Sample D Male 80.0
Superior colliculi
nTPM: 133.9
Samples: 4

Max nTPM: 156.2
Min nTPM: 99.9
Sample A Female 134.2
Sample B Female 156.2
Sample C Male 145.3
Sample D Male 99.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 372.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 372.4
Samples: 4

Max nTPM: 392.1
Min nTPM: 348.5
Sample A Male 384.5
Sample B Male 364.5
Sample C Female 348.5
Sample D Female 392.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71763492 Antisense, RP_050921_02_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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