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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1729.8 nTPM
GTEx:1729.8 nTPM
FANTOM5:1233.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003373
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1729.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1729.8
Samples: 170

Max nTPM: 4592.9
Min nTPM: 1065.0
Std nTPM: 465.0
Median nTPM: 1667.7
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4592.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4426.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3208.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2627.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2509.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2478.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2477.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2475.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2463.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2355.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2329.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2280.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2258.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2239.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2229.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2228.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2221.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2217.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2178.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2169.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2112.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2106.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2106.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2100.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2077.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2067.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2046.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2026.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2017.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2017.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2006.6
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2006.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2003.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1998.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1996.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1989.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1987.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1978.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1973.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1960.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1957.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1948.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1938.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1934.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1929.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1917.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1906.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1904.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1902.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1895.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1887.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1884.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1878.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1876.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1868.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1850.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1834.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1830.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1815.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1810.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1810.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1796.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1796.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1788.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1775.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1765.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1761.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1759.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1757.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1745.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1740.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1737.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1731.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1725.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1724.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1723.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1719.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1707.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1701.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1694.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1685.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1675.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1674.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1670.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1668.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1667.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1666.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1657.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1655.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1641.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1621.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1608.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1592.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1586.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1583.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1574.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1567.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1564.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1563.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1563.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1554.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1553.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1550.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1550.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1536.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1535.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1534.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1527.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1522.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1517.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1513.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1505.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1500.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1499.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1498.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1493.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1492.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1483.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1475.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1468.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1463.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1463.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1463.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1453.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1453.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1446.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1437.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1420.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1416.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1407.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1407.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1400.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1399.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1388.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1381.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1379.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1373.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1369.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1363.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1361.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1347.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1347.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1343.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1341.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1341.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1338.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1335.8
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1325.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1324.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1322.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1308.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1291.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1290.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1289.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1289.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1288.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1276.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1275.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 1241.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1234.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1234.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1231.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1188.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1178.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1159.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1146.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1137.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1123.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1116.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1065.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1233.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1233.1
FF:10204-103F6 68 years, female 1233.1

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