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  • ROMO1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:193.8 nTPM
HPA Brain:63.2 nTPM
GTEx:193.8 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:98.0 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.2
Sample id Sample description nTPM
Amygdala
nTPM: 63.2
2695 Female, age 67, right hemisphere 71.3
1987 Female, age 91, left hemisphere 64.6
2814 Male, age 76, right hemisphere 62.8
2517 Female, age 94, left hemisphere 60.0
2514 Male, age 75, right hemisphere 57.6
Basal amygdala
nTPM: 52.5
2609 Male, age 75, right hemisphere 56.4
2685 Female, age 94, left hemisphere 54.7
2110 Male, age 80, left hemisphere 53.8
2243 Female, age 91, right hemisphere 53.2
2827 Female, age 67, right hemisphere 49.0
1955 Male, age 76, both hemispheres 47.8
Central amygdala
nTPM: 61.0
2826 Female, age 94, left hemisphere 81.0
1905 Male, age 76, both hemispheres 69.5
2515 Male, age 75, right hemisphere 64.8
2239 Male, age 80, left hemisphere 50.5
2701 Female, age 91, right hemisphere 39.1
Corticomedial amygdala
nTPM: 52.1
2428 Male, age 75, right hemisphere 64.0
2829 Male, age 80, left hemisphere 58.0
2242 Female, age 91, right hemisphere 54.2
2429 Female, age 94, left hemisphere 50.1
2535 Female, age 67, right hemisphere 44.8
2240 Male, age 76, both hemispheres 41.2
Lateral amygdala
nTPM: 59.0
2534 Female, age 94, left hemisphere 75.1
2516 Male, age 75, right hemisphere 71.6
2830 Female, age 67, right hemisphere 54.6
1883 Male, age 76, both hemispheres 54.1
2256 Male, age 80, left hemisphere 49.3
2255 Female, age 91, right hemisphere 49.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 193.8
Samples: 181

Max nTPM: 600.6
Min nTPM: 100.7
Std nTPM: 69.0
Median nTPM: 178.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 600.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 466.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 442.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 439.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 428.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 423.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 356.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 336.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 336.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 317.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 313.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 296.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 288.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 276.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 268.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 268.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 261.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 257.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 256.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 254.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 251.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 251.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 250.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 246.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 243.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 240.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 235.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 232.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 228.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 225.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 225.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 224.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 224.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 223.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 223.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 223.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 222.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 220.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 218.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 217.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 215.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 213.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 209.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 208.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 208.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 207.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 207.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 207.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 205.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 204.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 204.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 204.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 203.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 203.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 202.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 202.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 202.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 202.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 198.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 198.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 198.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 198.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 197.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 196.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 196.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 195.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 194.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 193.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 191.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 191.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 190.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 190.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 188.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 188.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 187.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 186.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 186.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 185.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 183.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 182.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 182.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 180.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 179.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 179.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 178.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 178.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 178.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 177.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 177.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 176.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 176.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 174.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 174.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 173.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 173.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 172.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 171.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 171.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 171.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 171.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 170.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 170.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 169.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 169.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 168.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 167.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 167.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 166.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 166.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 165.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 164.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 163.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 162.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 161.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 161.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 161.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 160.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 159.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 159.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 157.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 156.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 156.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 155.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 154.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 153.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 152.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 152.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 151.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 150.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 150.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 149.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 148.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 146.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 146.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 145.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 142.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 139.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 138.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 137.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 137.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 132.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 131.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 128.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 127.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 125.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 113.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 112.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 109.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 105.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 102.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 101.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 100.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.1
FF:10151-102I7 76 years, female 48.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.3
Pig sample Sample description nTPM
Amygdala
nTPM: 20.3
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.3
Sample A Female 26.9
Sample B Female 20.7
Sample C Male 17.4
Sample D Male 16.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 98.0
Samples: 4

Max nTPM: 110.5
Min nTPM: 85.6
Sample A Male 95.2
Sample B Male 100.7
Sample C Female 110.5
Sample D Female 85.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
70303761 Antisense, RP_050609_02_D07, Mouse strain C57BL/6J (56 days, male) 4.9

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