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  • ROMO1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:164.8 nTPM
HPA Brain:74.6 nTPM
GTEx:164.8 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:33.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.7
1981 Female, age 72, midline 99.5
2194 Female, age 79, both hemispheres 67.5
2816 Male, age 47, midline 67.5
2565 Male, age 75, midline 60.7
2048 Male, age 55, midline 53.2
Cervical spinal cord, dorsal horn
nTPM: 74.2
2173 Female, age 72, unknown 107.5
2296 Male, age 66, both hemispheres 81.2
2069 Male, age 47, both hemispheres 80.7
1877 Male, age 55, unknown 68.3
2297 Male, age 75, both hemispheres 57.1
2721 Male, age 90, both hemispheres 50.4
Cervical spinal cord, ventral horn
nTPM: 74.6
2098 Female, age 72, unknown 97.7
2809 Male, age 90, both hemispheres 87.4
2480 Male, age 75, both hemispheres 80.6
2068 Male, age 55, unknown 71.1
2295 Male, age 66, both hemispheres 58.8
2820 Female, age 79, both hemispheres 52.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.8
Samples: 204

Max nTPM: 324.6
Min nTPM: 77.6
Std nTPM: 45.5
Median nTPM: 155.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 324.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 293.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 285.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 274.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 274.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 273.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 271.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 270.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 261.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 255.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 255.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 252.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 249.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 247.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 246.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 245.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 244.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 239.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 227.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 226.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 224.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 224.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 223.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 223.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 216.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 214.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 214.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 213.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 212.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 207.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 206.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 206.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 205.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 204.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 204.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 201.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 201.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 200.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 200.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 199.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 196.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 195.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 194.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 194.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 193.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 193.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 192.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 192.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 192.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 191.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 191.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 191.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 190.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 189.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 187.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 186.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 185.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 185.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 181.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 180.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 179.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 177.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 177.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 177.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 176.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 176.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 176.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 175.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 174.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 174.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 171.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 171.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 168.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 165.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 165.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 164.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 163.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 162.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 162.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 162.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 162.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 162.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 161.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 161.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 160.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 160.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 160.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 159.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 159.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 157.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 155.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 155.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 155.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 155.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 154.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 154.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 154.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 154.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 153.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 152.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 151.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 151.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 151.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 151.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 151.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 151.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 151.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 150.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 150.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 149.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 149.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 149.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 149.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 147.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 146.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 144.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 144.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 143.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 142.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 141.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 140.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 140.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 140.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 139.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 138.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 138.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 138.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 137.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 137.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 137.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 137.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 137.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 136.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 135.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 135.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 134.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 133.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 133.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 132.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 132.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 131.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 130.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 130.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 130.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 128.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 127.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 126.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 124.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 124.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 124.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 124.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 122.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 122.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 121.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 121.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 121.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 120.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 120.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 119.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 118.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 117.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 116.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 115.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 115.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 114.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 113.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 112.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 109.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 108.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 107.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 106.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 99.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 95.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 94.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 77.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 42.4
FF:10181-103D1 60 years, female 57.2
FF:10159-103A6 76 years, female 27.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 23.8
Sample A Female 28.9
Sample B Female 29.6
Sample C Male 41.0
Sample D Male 23.8
Ventral spinal cord
nTPM: 33.4
Samples: 4

Max nTPM: 39.0
Min nTPM: 28.6
Sample A Female 28.6
Sample B Female 39.0
Sample C Male 36.1
Sample D Male 29.9

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