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  • CAPNS1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:312.1 nTPM
HPA Brain:190.8 nTPM
GTEx:312.1 nTPM
FANTOM5:129.0 Scaled Tags Per Million
Pig:419.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 171.0
2565 Male, age 75, midline 200.1
2816 Male, age 47, midline 178.1
2194 Female, age 79, both hemispheres 174.6
1981 Female, age 72, midline 158.8
2048 Male, age 55, midline 143.5
Cervical spinal cord, dorsal horn
nTPM: 177.4
2721 Male, age 90, both hemispheres 213.7
2296 Male, age 66, both hemispheres 175.6
2069 Male, age 47, both hemispheres 173.8
2173 Female, age 72, unknown 170.3
1877 Male, age 55, unknown 168.0
2297 Male, age 75, both hemispheres 162.9
Cervical spinal cord, ventral horn
nTPM: 190.8
2820 Female, age 79, both hemispheres 227.2
2480 Male, age 75, both hemispheres 208.1
2068 Male, age 55, unknown 189.3
2295 Male, age 66, both hemispheres 181.8
2098 Female, age 72, unknown 170.1
2809 Male, age 90, both hemispheres 168.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 312.1
Samples: 204

Max nTPM: 572.4
Min nTPM: 189.0
Std nTPM: 66.8
Median nTPM: 303.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 572.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 553.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 521.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 514.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 496.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 473.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 460.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 455.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 448.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 447.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 441.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 437.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 437.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 435.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 424.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 419.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 408.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 394.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 392.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 391.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 387.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 385.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 382.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 381.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 380.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 378.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 377.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 375.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 373.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 372.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 370.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 369.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 368.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 368.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 368.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 367.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 366.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 365.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 365.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 364.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 364.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 364.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 363.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 359.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 355.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 353.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 353.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 351.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 350.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 348.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 347.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 345.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 344.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 342.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 342.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 340.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 336.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 335.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 335.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 334.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 334.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 334.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 333.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 332.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 331.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 328.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 328.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 326.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 325.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 324.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 323.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 322.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 320.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 320.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 319.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 318.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 318.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 316.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 315.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 314.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 314.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 313.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 311.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 310.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 310.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 310.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 309.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 308.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 308.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 307.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 307.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 307.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 306.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 306.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 306.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 306.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 304.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 304.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 304.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 303.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 303.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 303.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 303.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 303.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 303.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 302.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 301.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 300.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 300.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 300.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 300.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 300.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 300.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 298.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 297.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 296.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 296.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 295.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 293.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 293.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 293.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 292.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 292.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 291.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 291.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 290.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 290.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 290.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 288.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 288.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 288.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 287.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 287.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 286.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 285.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 285.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 284.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 284.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 283.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 282.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 281.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 281.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 280.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 278.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 276.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 274.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 273.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 273.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 271.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 271.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 270.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 269.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 268.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 267.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 265.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 265.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 263.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 259.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 259.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 258.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 257.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 257.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 256.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 255.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 254.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 253.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 253.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 251.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 251.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 251.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 250.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 249.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 249.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 248.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 247.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 243.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 242.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 241.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 239.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 239.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 238.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 237.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 237.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 236.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 236.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 234.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 234.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 232.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 232.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 230.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 229.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 228.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 224.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 218.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 213.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 211.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 211.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 210.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 209.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 205.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 197.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 194.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 193.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 189.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 129.0
FF:10181-103D1 60 years, female 130.1
FF:10159-103A6 76 years, female 128.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

419.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 369.3
Samples: 4

Max nTPM: 462.1
Min nTPM: 306.4
Sample A Female 306.4
Sample B Female 338.2
Sample C Male 462.1
Sample D Male 370.6
Ventral spinal cord
nTPM: 419.5
Samples: 4

Max nTPM: 486.6
Min nTPM: 380.1
Sample A Female 402.4
Sample B Female 380.1
Sample C Male 486.6
Sample D Male 408.8

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