MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:339.2 nTPM
HPA Brain:266.8 nTPM
GTEx:339.2 nTPM
FANTOM5:152.9 Scaled Tags Per Million
Pig:311.8 nTPM
Mouse:252.8 nTPM
Allen mouse:13.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 266.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 199.0
2666 Male, age 74, left hemisphere 284.7
2219 Male, age 76, both hemispheres 211.1
1870 Female, age 42, unknown 207.2
2586 Male, age 75, left hemisphere 201.6
1833 Male, age 53, unknown 190.0
2019 Male, age 18, unknown 188.0
2828 Female, age 72, unknown 183.1
1827 Male, age 72, unknown 180.0
1830 Male, age 51, unknown 178.8
2411 Female, age 72, unknown 165.5
Dorsal raphe nucleus
nTPM: 205.3
2047 Male, age 72, unknown 264.1
2750 Male, age 76, both hemispheres 225.4
1828 Male, age 53, unknown 221.0
2298 Female, age 72, unknown 170.0
2016 Female, age 72, unknown 146.2
Inferior colliculus
nTPM: 165.8
2849 Male, age 72, unknown 215.6
1848 Female, age 42, unknown 165.3
1890 Male, age 53, unknown 159.0
2097 Female, age 72, unknown 123.2
Median raphe nucleus
nTPM: 266.8
2220 Male, age 76, midline 266.8
Periaquaductal grey, anterior
nTPM: 178.8
1947 Male, age 18, unknown 182.3
1795 Male, age 51, unknown 179.5
2502 Female, age 75, unknown 174.6
Periaquaductal grey, dorsal
nTPM: 180.9
2850 Male, age 76, both hemispheres 253.0
1840 Male, age 53, unknown 165.2
2464 Female, age 72, unknown 163.9
1831 Male, age 72, unknown 141.5
Periaquaductal grey, lateral
nTPM: 146.7
2140 Male, age 76, both hemispheres 171.8
2272 Male, age 74, both hemispheres 144.8
2053 Male, age 18, unknown 123.4
Pretectal area
nTPM: 181.2
1817 Female, age 42, unknown 233.7
2007 Male, age 72, unknown 206.2
1816 Male, age 51, unknown 199.8
2667 Female, age 75, unknown 193.6
1815 Male, age 53, unknown 190.4
1944 Female, age 72, unknown 180.1
2825 Male, age 18, unknown 176.7
2224 Female, age 72, unknown 175.1
2407 Male, age 75, both hemispheres 167.0
2316 Male, age 76, right hemisphere 138.8
2273 Male, age 74, both hemispheres 131.7
Red nucleus
nTPM: 183.5
2725 Female, age 75, unknown 209.6
2785 Male, age 18, unknown 202.8
1821 Female, age 72, unknown 201.7
1865 Male, age 51, unknown 200.6
2588 Male, age 74, left hemisphere 192.3
2584 Male, age 75, left hemisphere 191.5
2769 Male, age 72, unknown 175.3
2227 Male, age 72, unknown 172.4
2823 Male, age 76, right hemisphere 170.8
1954 Female, age 42, unknown 169.8
1904 Male, age 53, unknown 162.5
2503 Female, age 72, unknown 152.9
Substantia nigra
nTPM: 232.8
1916 Female, age 42, unknown 287.1
1941 Male, age 53, unknown 267.5
2665 Male, age 74, both hemispheres 264.8
2699 Male, age 18, unknown 260.8
1851 Male, age 51, unknown 246.3
2409 Female, age 72, unknown 219.3
2241 Male, age 72, unknown 215.7
1889 Female, age 72, unknown 210.1
2583 Male, age 75, right hemisphere 189.2
2590 Female, age 75, unknown 167.4
Superior colliculus
nTPM: 170.3
2668 Female, age 75, unknown 192.3
2587 Male, age 74, left hemisphere 185.8
2664 Male, age 75, both hemispheres 178.4
1839 Male, age 51, unknown 174.0
1796 Male, age 53, unknown 172.8
2087 Female, age 72, unknown 171.5
1895 Male, age 76, right hemisphere 169.0
2261 Male, age 18, unknown 164.9
1913 Female, age 42, unknown 159.1
1995 Male, age 72, unknown 135.5
Ventral tegmental area
nTPM: 214.4
2223 Female, age 72, unknown 243.8
2218 Male, age 76, both hemispheres 236.9
1915 Female, age 42, unknown 230.3
2410 Female, age 72, unknown 207.2
2021 Male, age 53, unknown 195.0
1942 Male, age 51, unknown 173.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 339.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 339.2
Samples: 183

Max nTPM: 626.0
Min nTPM: 202.5
Std nTPM: 78.2
Median nTPM: 323.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 626.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 607.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 594.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 551.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 526.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 524.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 510.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 509.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 508.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 506.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 468.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 152.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.9
FF:10158-103A5 76 years, female 152.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 311.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 311.8
Samples: 4

Max nTPM: 364.1
Min nTPM: 258.1
Sample A Female 357.0
Sample B Female 258.1
Sample C Male 364.1
Sample D Male 268.1
Midbrain
nTPM: 279.1
Samples: 4

Max nTPM: 374.1
Min nTPM: 192.4
Sample A Female 374.1
Sample B Female 265.6
Sample C Male 284.3
Sample D Male 192.4
Periaqueductal gray
nTPM: 237.8
Samples: 3

Max nTPM: 295.4
Min nTPM: 200.8
Sample B Female 200.8
Sample C Male 295.4
Sample D Male 217.3
Superior colliculi
nTPM: 264.4
Samples: 4

Max nTPM: 300.3
Min nTPM: 206.4
Sample A Female 291.1
Sample B Female 206.4
Sample C Male 300.3
Sample D Male 259.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 252.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 252.8
Samples: 4

Max nTPM: 271.3
Min nTPM: 221.3
Sample A Male 221.3
Sample B Male 271.3
Sample C Female 248.8
Sample D Female 269.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
75934915 Antisense, RP_060530_01_E07, Mouse strain C57BL/6J (56 days, male) 17.2
68633113 Antisense, RP_050125_02_D09, Mouse strain C57BL/6J (56 days, male) 9.9

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