A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
95.7
nTPM
Monaco:
85.1
nTPM
Schmiedel:
35.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.7
HPA sample
nTPM
Classical monocyte nTPM: 79.8
Samples: 6
Max nTPM: 92.3
Min nTPM: 66.3
P10809_1003
73.2
P10809_1020
89.1
P10809_1039
78.5
P10809_1058
66.3
P10809_1080
79.5
P10809_1107
92.3
Intermediate monocyte nTPM: 95.7
Samples: 6
Max nTPM: 116.3
Min nTPM: 71.8
P10809_1004
91.4
P10809_1023
89.1
P10809_1042
116.3
P10809_1061
95.3
P10809_1081
71.8
P10809_1108
110.4
Non-classical monocyte nTPM: 95.0
Samples: 5
Max nTPM: 130.2
Min nTPM: 69.3
P10809_1005
87.6
P10809_1053
93.0
P10809_1072
130.2
P10809_1082
69.3
P10809_1109
95.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.1
Monaco sample
nTPM
Classical monocyte nTPM: 81.1
Samples: 4
Max nTPM: 88.3
Min nTPM: 69.4
RHH5313_R3680
84.5
RHH5221_R3593
88.3
RHH5250_R3622
82.0
RHH5279_R3651
69.4
Intermediate monocyte nTPM: 85.1
Samples: 4
Max nTPM: 90.7
Min nTPM: 72.5
RHH5314_R3681
90.1
RHH5222_R3594
72.5
RHH5251_R3623
87.3
RHH5280_R3652
90.7
Non-classical monocyte nTPM: 82.0
Samples: 4
Max nTPM: 93.9
Min nTPM: 71.7
RHH5315_R3682
93.9
RHH5223_R3595
71.7
RHH5252_R3624
82.2
RHH5281_R3653
80.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Schmiedel sample id
TPM
Classical monocyte TPM: 35.5
Samples: 91
Max TPM: 66.8
Min TPM: 14.8
MONOCYTES_1
66.8
MONOCYTES_2
59.2
MONOCYTES_3
59.0
MONOCYTES_4
56.6
MONOCYTES_5
55.5
MONOCYTES_6
53.9
MONOCYTES_7
53.0
MONOCYTES_8
52.6
MONOCYTES_9
52.5
MONOCYTES_10
52.4
MONOCYTES_11
52.2
MONOCYTES_12
50.8
MONOCYTES_13
50.4
MONOCYTES_14
48.7
MONOCYTES_15
48.7
MONOCYTES_16
48.2
MONOCYTES_17
47.1
MONOCYTES_18
47.1
MONOCYTES_19
47.1
MONOCYTES_20
46.6
MONOCYTES_21
46.6
MONOCYTES_22
46.1
MONOCYTES_23
45.8
MONOCYTES_24
43.8
MONOCYTES_25
43.7
MONOCYTES_26
43.6
MONOCYTES_27
43.3
MONOCYTES_28
43.3
MONOCYTES_29
42.4
MONOCYTES_30
41.0
MONOCYTES_31
40.7
MONOCYTES_32
40.1
MONOCYTES_33
40.0
MONOCYTES_34
39.9
MONOCYTES_35
39.4
MONOCYTES_36
39.0
MONOCYTES_37
38.4
MONOCYTES_38
38.3
MONOCYTES_39
37.6
MONOCYTES_40
37.2
MONOCYTES_41
36.6
MONOCYTES_42
36.6
MONOCYTES_43
35.4
MONOCYTES_44
34.9
MONOCYTES_45
34.7
MONOCYTES_46
34.2
MONOCYTES_47
34.0
MONOCYTES_48
33.6
MONOCYTES_49
32.5
MONOCYTES_50
32.4
MONOCYTES_51
32.0
MONOCYTES_52
31.9
MONOCYTES_53
31.3
MONOCYTES_54
30.9
MONOCYTES_55
30.7
MONOCYTES_56
30.7
MONOCYTES_57
30.1
MONOCYTES_58
30.1
MONOCYTES_59
29.7
MONOCYTES_60
29.5
MONOCYTES_61
29.5
MONOCYTES_62
29.5
MONOCYTES_63
29.2
MONOCYTES_64
27.5
MONOCYTES_65
27.0
MONOCYTES_66
26.9
MONOCYTES_67
26.3
MONOCYTES_68
26.3
MONOCYTES_69
25.6
MONOCYTES_70
25.5
MONOCYTES_71
24.5
MONOCYTES_72
24.4
MONOCYTES_73
24.2
MONOCYTES_74
23.9
MONOCYTES_75
23.9
MONOCYTES_76
23.8
MONOCYTES_77
22.5
MONOCYTES_78
22.3
MONOCYTES_79
22.1
MONOCYTES_80
21.4
MONOCYTES_81
20.8
MONOCYTES_82
20.7
MONOCYTES_83
19.5
MONOCYTES_84
19.3
MONOCYTES_85
16.9
MONOCYTES_86
16.3
MONOCYTES_87
16.2
MONOCYTES_88
15.8
MONOCYTES_89
15.7
MONOCYTES_90
15.6
MONOCYTES_91
14.8
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Non-classical monocyte TPM: 30.4
Samples: 90
Max TPM: 62.1
Min TPM: 5.6
M2_1
62.1
M2_2
59.5
M2_3
57.4
M2_4
56.0
M2_5
55.2
M2_6
51.7
M2_7
51.5
M2_8
50.2
M2_9
48.0
M2_10
47.8
M2_11
47.1
M2_12
46.3
M2_13
45.7
M2_14
45.4
M2_15
44.4
M2_16
43.6
M2_17
43.6
M2_18
43.5
M2_19
42.7
M2_20
42.4
M2_21
42.4
M2_22
42.0
M2_23
41.7
M2_24
40.1
M2_25
39.2
M2_26
38.9
M2_27
37.8
M2_28
36.3
M2_29
35.5
M2_30
35.0
M2_31
34.8
M2_32
34.2
M2_33
33.8
M2_34
33.8
M2_35
33.6
M2_36
33.4
M2_37
33.2
M2_38
33.0
M2_39
32.8
M2_40
32.7
M2_41
31.9
M2_42
31.8
M2_43
31.6
M2_44
31.0
M2_45
30.6
M2_46
30.4
M2_47
30.0
M2_48
29.6
M2_49
28.8
M2_50
28.6
M2_51
27.8
M2_52
27.8
M2_53
27.6
M2_54
27.4
M2_55
27.0
M2_56
27.0
M2_57
27.0
M2_58
26.9
M2_59
26.0
M2_60
25.8
M2_61
24.9
M2_62
23.7
M2_63
21.5
M2_64
20.9
M2_65
20.3
M2_66
19.8
M2_67
19.8
M2_68
19.6
M2_69
19.5
M2_70
19.4
M2_71
18.1
M2_72
17.9
M2_73
17.7
M2_74
17.3
M2_75
16.7
M2_76
14.4
M2_77
13.8
M2_78
13.7
M2_79
13.5
M2_80
12.0
M2_81
11.5
M2_82
11.3
M2_83
11.2
M2_84
11.2
M2_85
9.7
M2_86
9.5
M2_87
7.9
M2_88
7.8
M2_89
6.0
M2_90
5.6
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