BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:392.5 nTPM
HPA Brain:266.3 nTPM
GTEx:392.5 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Macaque:178.5 nTPM
Mouse:307.7 nTPM
Rat:172.4 nTPM
Pig:165.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 266.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 194.6
1827 Male, age 72, unknown 242.9
2666 Male, age 74, left hemisphere 210.4
2219 Male, age 76, both hemispheres 199.8
2019 Male, age 18, unknown 199.5
2586 Male, age 75, left hemisphere 190.1
2828 Female, age 72, unknown 187.5
1870 Female, age 42, unknown 186.4
1833 Male, age 53, unknown 184.4
2411 Female, age 72, unknown 184.0
1830 Male, age 51, unknown 160.5
Dorsal raphe nucleus
nTPM: 241.8
2298 Female, age 72, unknown 312.6
1828 Male, age 53, unknown 249.2
2047 Male, age 72, unknown 248.5
2016 Female, age 72, unknown 218.9
2750 Male, age 76, both hemispheres 179.6
Inferior colliculus
nTPM: 215.9
2097 Female, age 72, unknown 223.2
2849 Male, age 72, unknown 219.7
1890 Male, age 53, unknown 216.0
1848 Female, age 42, unknown 204.7
Median raphe nucleus
nTPM: 236.8
2220 Male, age 76, midline 236.8
Periaquaductal grey, anterior
nTPM: 241.0
1947 Male, age 18, unknown 270.1
1795 Male, age 51, unknown 260.4
2502 Female, age 75, unknown 192.4
Periaquaductal grey, dorsal
nTPM: 218.1
2850 Male, age 76, both hemispheres 298.3
1840 Male, age 53, unknown 213.0
1831 Male, age 72, unknown 185.6
2464 Female, age 72, unknown 175.5
Periaquaductal grey, lateral
nTPM: 266.3
2272 Male, age 74, both hemispheres 375.4
2140 Male, age 76, both hemispheres 222.7
2053 Male, age 18, unknown 200.7
Pretectal area
nTPM: 246.1
2273 Male, age 74, both hemispheres 321.1
2007 Male, age 72, unknown 292.9
1816 Male, age 51, unknown 287.6
1817 Female, age 42, unknown 283.3
1944 Female, age 72, unknown 257.6
2667 Female, age 75, unknown 254.3
2224 Female, age 72, unknown 233.8
1815 Male, age 53, unknown 230.1
2825 Male, age 18, unknown 222.7
2316 Male, age 76, right hemisphere 162.1
2407 Male, age 75, both hemispheres 161.9
Red nucleus
nTPM: 200.0
2725 Female, age 75, unknown 256.5
1821 Female, age 72, unknown 254.1
2503 Female, age 72, unknown 216.7
2785 Male, age 18, unknown 206.3
1954 Female, age 42, unknown 202.2
2769 Male, age 72, unknown 200.8
1865 Male, age 51, unknown 196.6
2227 Male, age 72, unknown 191.3
2823 Male, age 76, right hemisphere 181.6
2588 Male, age 74, left hemisphere 170.8
1904 Male, age 53, unknown 170.4
2584 Male, age 75, left hemisphere 152.7
Substantia nigra
nTPM: 217.0
1916 Female, age 42, unknown 311.9
1941 Male, age 53, unknown 266.8
1889 Female, age 72, unknown 250.9
1851 Male, age 51, unknown 226.1
2699 Male, age 18, unknown 219.0
2665 Male, age 74, both hemispheres 214.2
2409 Female, age 72, unknown 183.9
2241 Male, age 72, unknown 176.3
2590 Female, age 75, unknown 171.4
2583 Male, age 75, right hemisphere 149.7
Superior colliculus
nTPM: 201.9
2587 Male, age 74, left hemisphere 228.2
2668 Female, age 75, unknown 224.6
1796 Male, age 53, unknown 224.2
2261 Male, age 18, unknown 220.0
1895 Male, age 76, right hemisphere 210.6
2087 Female, age 72, unknown 210.4
1839 Male, age 51, unknown 184.7
2664 Male, age 75, both hemispheres 174.6
1995 Male, age 72, unknown 173.9
1913 Female, age 42, unknown 167.9
Ventral tegmental area
nTPM: 204.2
1915 Female, age 42, unknown 246.7
2218 Male, age 76, both hemispheres 224.8
2410 Female, age 72, unknown 202.5
1942 Male, age 51, unknown 192.0
2223 Female, age 72, unknown 183.5
2021 Male, age 53, unknown 175.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 392.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 392.5
Samples: 183

Max nTPM: 952.0
Min nTPM: 166.9
Std nTPM: 120.7
Median nTPM: 363.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 952.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 809.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 706.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 699.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 681.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 676.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 642.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 611.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 606.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 602.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 598.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 178.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 121.6
Samples: 1

Max nTPM: 121.6
Min nTPM: 121.6
Sample A 121.6
Midbrain
nTPM: 150.7
Samples: 1

Max nTPM: 150.7
Min nTPM: 150.7
Sample A 150.7
Superior colliculi
nTPM: 178.5
Samples: 1

Max nTPM: 178.5
Min nTPM: 178.5
Sample A 178.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 165.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.8
Samples: 3

Max nTPM: 175.1
Min nTPM: 82.5
Sample A Female 175.1
Sample B Female 82.5
Sample C Male 101.8
Midbrain
nTPM: 134.4
Samples: 3

Max nTPM: 181.4
Min nTPM: 107.8
Sample B Female 114.0
Sample C Male 181.4
Sample D Male 107.8
Periaqueductal gray
nTPM: 94.6
Samples: 3

Max nTPM: 104.2
Min nTPM: 80.5
Sample B Female 104.2
Sample C Male 99.0
Sample D Male 80.5
Superior colliculi
nTPM: 166.0
Samples: 4

Max nTPM: 223.1
Min nTPM: 113.0
Sample A Female 223.1
Sample B Female 113.0
Sample C Male 202.2
Sample D Male 125.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 307.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 307.7
Samples: 4

Max nTPM: 344.5
Min nTPM: 282.0
Sample A 308.2
Sample B 344.5
Sample C 282.0
Sample D 295.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 172.4
Rat sample Sample description nTPM
Midbrain
nTPM: 172.4
Samples: 4

Max nTPM: 181.3
Min nTPM: 164.6
Sample A 164.6
Sample A 181.3
Sample A 172.5
Sample A 171.0

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