MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.4 nTPM
HPA Brain:35.5 nTPM
GTEx:88.4 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:7.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2666 Male, age 74, left hemisphere 37.7
2019 Male, age 18, unknown 36.0
2411 Female, age 72, unknown 35.3
1870 Female, age 42, unknown 34.0
2828 Female, age 72, unknown 32.6
1833 Male, age 53, unknown 30.0
1830 Male, age 51, unknown 29.4
1827 Male, age 72, unknown 29.1
2219 Male, age 76, both hemispheres 27.5
2586 Male, age 75, left hemisphere 24.9
Dorsal raphe nucleus
nTPM: 35.5
2298 Female, age 72, unknown 46.4
2750 Male, age 76, both hemispheres 36.1
1828 Male, age 53, unknown 32.9
2016 Female, age 72, unknown 31.2
2047 Male, age 72, unknown 30.9
Inferior colliculus
nTPM: 28.5
1890 Male, age 53, unknown 31.1
2097 Female, age 72, unknown 31.1
2849 Male, age 72, unknown 26.1
1848 Female, age 42, unknown 25.8
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 30.4
2502 Female, age 75, unknown 33.1
1947 Male, age 18, unknown 30.1
1795 Male, age 51, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 28.3
2464 Female, age 72, unknown 26.8
1840 Male, age 53, unknown 26.6
1831 Male, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 29.2
2053 Male, age 18, unknown 30.5
2272 Male, age 74, both hemispheres 29.8
2140 Male, age 76, both hemispheres 27.3
Pretectal area
nTPM: 30.9
2007 Male, age 72, unknown 35.6
2273 Male, age 74, both hemispheres 33.6
1816 Male, age 51, unknown 32.9
2316 Male, age 76, right hemisphere 32.1
1815 Male, age 53, unknown 30.8
1817 Female, age 42, unknown 30.8
2667 Female, age 75, unknown 30.4
2224 Female, age 72, unknown 29.9
1944 Female, age 72, unknown 29.8
2825 Male, age 18, unknown 28.4
2407 Male, age 75, both hemispheres 25.5
Red nucleus
nTPM: 35.4
1821 Female, age 72, unknown 43.2
1865 Male, age 51, unknown 39.6
2503 Female, age 72, unknown 39.2
1954 Female, age 42, unknown 36.5
1904 Male, age 53, unknown 36.1
2725 Female, age 75, unknown 35.5
2769 Male, age 72, unknown 33.9
2227 Male, age 72, unknown 33.6
2785 Male, age 18, unknown 33.3
2823 Male, age 76, right hemisphere 33.3
2588 Male, age 74, left hemisphere 32.7
2584 Male, age 75, left hemisphere 27.6
Substantia nigra
nTPM: 33.6
1851 Male, age 51, unknown 39.1
2241 Male, age 72, unknown 37.6
1941 Male, age 53, unknown 36.0
2699 Male, age 18, unknown 35.3
1916 Female, age 42, unknown 33.9
2409 Female, age 72, unknown 32.9
2665 Male, age 74, both hemispheres 32.7
1889 Female, age 72, unknown 32.3
2590 Female, age 75, unknown 30.3
2583 Male, age 75, right hemisphere 26.1
Superior colliculus
nTPM: 31.4
1913 Female, age 42, unknown 37.5
2587 Male, age 74, left hemisphere 37.3
1995 Male, age 72, unknown 36.8
2668 Female, age 75, unknown 31.5
1839 Male, age 51, unknown 31.1
1796 Male, age 53, unknown 30.8
1895 Male, age 76, right hemisphere 28.8
2261 Male, age 18, unknown 28.3
2087 Female, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 25.3
Ventral tegmental area
nTPM: 33.9
2223 Female, age 72, unknown 39.5
2410 Female, age 72, unknown 37.0
1915 Female, age 42, unknown 36.1
2021 Male, age 53, unknown 31.4
2218 Male, age 76, both hemispheres 31.4
1942 Male, age 51, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.4
Samples: 183

Max nTPM: 194.5
Min nTPM: 40.5
Std nTPM: 26.7
Median nTPM: 82.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 194.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 188.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 155.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 151.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 148.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 148.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 147.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 141.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 141.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 138.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 136.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 17.1
Min nTPM: 9.9
Sample A Female 17.1
Sample B Female 12.8
Sample C Male 11.7
Sample D Male 9.9
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 15.1
Min nTPM: 10.4
Sample A Female 15.1
Sample B Female 10.8
Sample C Male 11.7
Sample D Male 10.4
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 9.8
Min nTPM: 8.8
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 8.8
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.1
Sample A Female 13.3
Sample B Female 12.8
Sample C Male 14.0
Sample D Male 10.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.5
Sample A Male 9.4
Sample B Male 6.1
Sample C Female 8.2
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75198160 Antisense, RP_060502_02_A11, Mouse strain C57BL/6J (56 days, male) 0.1

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