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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:112.6 nTPM
HPA Brain:47.5 nTPM
GTEx:112.6 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:14.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 39.2
1981 Female, age 72, midline 51.8
2565 Male, age 75, midline 43.8
2048 Male, age 55, midline 37.3
2816 Male, age 47, midline 34.3
2194 Female, age 79, both hemispheres 28.8
Cervical spinal cord, dorsal horn
nTPM: 42.9
2296 Male, age 66, both hemispheres 59.2
2173 Female, age 72, unknown 55.1
2069 Male, age 47, both hemispheres 50.1
1877 Male, age 55, unknown 39.9
2297 Male, age 75, both hemispheres 27.5
2721 Male, age 90, both hemispheres 25.7
Cervical spinal cord, ventral horn
nTPM: 47.5
2098 Female, age 72, unknown 68.9
2809 Male, age 90, both hemispheres 57.2
2480 Male, age 75, both hemispheres 55.8
2295 Male, age 66, both hemispheres 36.8
2068 Male, age 55, unknown 36.1
2820 Female, age 79, both hemispheres 30.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 112.6
Samples: 204

Max nTPM: 221.3
Min nTPM: 49.7
Std nTPM: 29.2
Median nTPM: 113.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 221.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 184.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 182.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 181.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 179.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 175.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 171.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 170.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 167.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 164.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 163.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 161.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 161.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 160.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 160.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 159.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 157.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 157.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 155.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 155.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 152.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 151.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 149.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 147.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 145.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 143.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 142.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 142.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 141.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 141.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 141.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 140.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 140.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 140.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 138.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 138.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 137.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 137.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 137.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 137.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 135.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 134.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 134.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 133.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 133.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 130.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 130.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 130.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 130.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 129.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 129.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 128.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 128.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 128.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 127.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 126.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 126.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 126.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 126.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 126.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 126.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 126.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 125.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 124.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 124.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 123.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 123.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 123.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 122.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 122.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 122.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 122.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 121.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 121.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 121.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 120.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 120.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 119.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 119.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 118.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 118.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 117.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 117.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 116.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 115.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 115.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 115.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 115.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 115.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 115.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 114.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 114.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 114.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 114.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 114.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 113.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 113.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 112.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 112.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 112.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 111.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 111.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 109.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 109.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 109.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 108.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 106.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 106.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 105.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 104.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 104.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 104.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 103.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 103.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 102.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 102.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 101.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 101.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 101.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 101.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 98.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 98.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 97.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 97.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 97.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 97.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 97.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 95.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 94.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 94.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 93.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 92.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 91.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 91.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 91.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 90.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 90.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 90.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 89.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 89.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 88.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 87.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 87.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 87.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 86.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 86.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 86.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 86.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 86.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 85.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 84.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 83.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 82.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 81.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 81.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 81.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 79.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 79.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 78.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 78.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 77.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 77.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 77.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 75.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 75.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 75.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 74.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 71.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 71.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 70.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 70.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 69.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 69.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 68.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 67.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 66.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 64.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 61.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 59.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 56.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 49.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.1
FF:10181-103D1 60 years, female 33.0
FF:10159-103A6 76 years, female 19.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 13.9
Sample C Male 17.6
Sample D Male 12.2
Ventral spinal cord
nTPM: 14.1
Samples: 4

Max nTPM: 14.9
Min nTPM: 13.4
Sample A Female 13.9
Sample B Female 14.9
Sample C Male 14.2
Sample D Male 13.4

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