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  • AIF1L
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:262.3 nTPM
HPA Brain:166.9 nTPM
GTEx:262.3 nTPM
FANTOM5:281.8 Scaled Tags Per Million
Pig:272.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 114.4
2565 Male, age 75, midline 129.6
2816 Male, age 47, midline 124.0
2194 Female, age 79, both hemispheres 113.0
2048 Male, age 55, midline 109.8
1981 Female, age 72, midline 95.4
Cervical spinal cord, dorsal horn
nTPM: 107.4
2173 Female, age 72, unknown 127.0
2296 Male, age 66, both hemispheres 125.0
2069 Male, age 47, both hemispheres 108.8
1877 Male, age 55, unknown 108.1
2297 Male, age 75, both hemispheres 90.5
2721 Male, age 90, both hemispheres 84.9
Cervical spinal cord, ventral horn
nTPM: 166.9
2480 Male, age 75, both hemispheres 254.6
2809 Male, age 90, both hemispheres 198.8
2295 Male, age 66, both hemispheres 157.2
2820 Female, age 79, both hemispheres 148.7
2068 Male, age 55, unknown 144.8
2098 Female, age 72, unknown 97.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 262.3
Samples: 204

Max nTPM: 683.5
Min nTPM: 63.7
Std nTPM: 100.4
Median nTPM: 245.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 683.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 566.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 562.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 550.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 539.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 505.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 502.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 498.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 494.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 486.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 458.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 458.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 457.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 454.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 433.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 429.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 419.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 408.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 403.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 401.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 401.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 398.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 394.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 386.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 373.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 367.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 365.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 365.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 363.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 361.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 353.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 350.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 345.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 343.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 340.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 332.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 328.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 327.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 323.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 321.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 320.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 319.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 318.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 314.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 313.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 313.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 312.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 312.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 308.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 306.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 306.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 306.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 305.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 305.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 303.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 301.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 300.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 299.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 299.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 299.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 295.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 294.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 293.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 291.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 291.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 290.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 287.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 286.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 286.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 286.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 283.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 279.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 278.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 278.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 273.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 272.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 272.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 271.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 271.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 267.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 263.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 262.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 262.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 262.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 262.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 262.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 262.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 259.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 257.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 255.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 255.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 254.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 254.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 254.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 253.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 252.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 252.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 251.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 248.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 247.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 247.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 246.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 243.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 243.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 242.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 241.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 240.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 238.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 238.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 236.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 235.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 234.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 232.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 231.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 230.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 230.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 229.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 225.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 224.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 224.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 223.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 223.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 223.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 222.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 221.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 221.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 219.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 218.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 216.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 215.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 215.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 215.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 214.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 211.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 210.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 210.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 210.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 210.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 208.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 207.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 207.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 206.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 206.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 205.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 205.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 204.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 201.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 201.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 199.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 198.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 196.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 194.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 194.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 194.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 193.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 193.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 191.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 191.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 187.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 187.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 187.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 185.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 184.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 183.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 183.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 180.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 177.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 177.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 177.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 177.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 176.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 169.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 164.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 164.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 163.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 161.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 161.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 159.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 156.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 155.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 153.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 151.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 151.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 145.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 140.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 136.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 133.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 128.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 127.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 121.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 117.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 107.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 106.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 104.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 101.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 281.8
FF:10181-103D1 60 years, female 364.9
FF:10159-103A6 76 years, female 198.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 240.5
Samples: 4

Max nTPM: 268.0
Min nTPM: 208.5
Sample A Female 208.5
Sample B Female 249.6
Sample C Male 268.0
Sample D Male 235.9
Ventral spinal cord
nTPM: 272.9
Samples: 4

Max nTPM: 319.6
Min nTPM: 247.7
Sample A Female 256.6
Sample B Female 267.7
Sample C Male 247.7
Sample D Male 319.6

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