MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.1 nTPM
HPA Brain:72.8 nTPM
GTEx:130.1 nTPM
FANTOM5:460.7 Scaled Tags Per Million
Pig:272.4 nTPM
Mouse:247.8 nTPM
Allen mouse:22.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.5
2219 Male, age 76, both hemispheres 64.4
1827 Male, age 72, unknown 58.1
2411 Female, age 72, unknown 56.0
2828 Female, age 72, unknown 51.2
1870 Female, age 42, unknown 47.9
2019 Male, age 18, unknown 47.4
1833 Male, age 53, unknown 44.9
1830 Male, age 51, unknown 41.0
2666 Male, age 74, left hemisphere 26.2
2586 Male, age 75, left hemisphere 17.8
Dorsal raphe nucleus
nTPM: 57.6
2298 Female, age 72, unknown 73.2
2750 Male, age 76, both hemispheres 61.0
2047 Male, age 72, unknown 56.4
1828 Male, age 53, unknown 55.9
2016 Female, age 72, unknown 41.6
Inferior colliculus
nTPM: 45.7
2849 Male, age 72, unknown 51.0
1848 Female, age 42, unknown 45.8
1890 Male, age 53, unknown 45.7
2097 Female, age 72, unknown 40.2
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 43.3
1947 Male, age 18, unknown 51.5
1795 Male, age 51, unknown 46.6
2502 Female, age 75, unknown 31.9
Periaquaductal grey, dorsal
nTPM: 55.0
2850 Male, age 76, both hemispheres 75.8
1831 Male, age 72, unknown 52.3
1840 Male, age 53, unknown 50.9
2464 Female, age 72, unknown 41.0
Periaquaductal grey, lateral
nTPM: 62.2
2272 Male, age 74, both hemispheres 82.7
2140 Male, age 76, both hemispheres 62.8
2053 Male, age 18, unknown 41.1
Pretectal area
nTPM: 52.4
2273 Male, age 74, both hemispheres 82.6
2667 Female, age 75, unknown 62.2
2224 Female, age 72, unknown 61.3
1817 Female, age 42, unknown 53.4
2407 Male, age 75, both hemispheres 47.8
1815 Male, age 53, unknown 47.3
1816 Male, age 51, unknown 45.9
1944 Female, age 72, unknown 45.9
2007 Male, age 72, unknown 44.7
2316 Male, age 76, right hemisphere 42.9
2825 Male, age 18, unknown 42.8
Red nucleus
nTPM: 45.1
2725 Female, age 75, unknown 66.2
1865 Male, age 51, unknown 52.0
2503 Female, age 72, unknown 50.4
2769 Male, age 72, unknown 48.4
2227 Male, age 72, unknown 47.7
2823 Male, age 76, right hemisphere 46.0
1821 Female, age 72, unknown 45.3
1904 Male, age 53, unknown 45.2
2785 Male, age 18, unknown 43.8
1954 Female, age 42, unknown 40.7
2584 Male, age 75, left hemisphere 29.3
2588 Male, age 74, left hemisphere 25.6
Substantia nigra
nTPM: 46.6
1941 Male, age 53, unknown 59.7
1916 Female, age 42, unknown 56.9
2699 Male, age 18, unknown 52.9
2409 Female, age 72, unknown 50.5
2590 Female, age 75, unknown 50.5
1851 Male, age 51, unknown 49.1
1889 Female, age 72, unknown 46.5
2665 Male, age 74, both hemispheres 38.7
2241 Male, age 72, unknown 30.8
2583 Male, age 75, right hemisphere 30.3
Superior colliculus
nTPM: 41.9
2587 Male, age 74, left hemisphere 71.9
1895 Male, age 76, right hemisphere 50.8
1796 Male, age 53, unknown 45.7
1913 Female, age 42, unknown 45.1
2261 Male, age 18, unknown 44.8
1839 Male, age 51, unknown 39.8
1995 Male, age 72, unknown 38.1
2087 Female, age 72, unknown 37.2
2668 Female, age 75, unknown 25.9
2664 Male, age 75, both hemispheres 19.6
Ventral tegmental area
nTPM: 48.6
2218 Male, age 76, both hemispheres 67.5
1915 Female, age 42, unknown 59.1
2410 Female, age 72, unknown 46.7
2223 Female, age 72, unknown 45.1
1942 Male, age 51, unknown 39.4
2021 Male, age 53, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.1
Samples: 183

Max nTPM: 233.3
Min nTPM: 71.1
Std nTPM: 26.5
Median nTPM: 128.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 233.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 201.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 200.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 187.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 186.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 186.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 184.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 182.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 178.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 175.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 175.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 460.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 460.7
FF:10158-103A5 76 years, female 460.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 272.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 267.4
Samples: 4

Max nTPM: 304.7
Min nTPM: 233.3
Sample A Female 304.7
Sample B Female 241.5
Sample C Male 290.2
Sample D Male 233.3
Midbrain
nTPM: 272.4
Samples: 4

Max nTPM: 330.8
Min nTPM: 233.7
Sample A Female 330.8
Sample B Female 256.8
Sample C Male 268.4
Sample D Male 233.7
Periaqueductal gray
nTPM: 264.3
Samples: 3

Max nTPM: 285.9
Min nTPM: 240.8
Sample B Female 266.2
Sample C Male 285.9
Sample D Male 240.8
Superior colliculi
nTPM: 256.5
Samples: 4

Max nTPM: 266.9
Min nTPM: 238.9
Sample A Female 266.9
Sample B Female 238.9
Sample C Male 261.6
Sample D Male 258.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 247.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 247.8
Samples: 4

Max nTPM: 266.6
Min nTPM: 227.7
Sample A Male 227.7
Sample B Male 246.6
Sample C Female 266.6
Sample D Female 250.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.1
69080016 Antisense, RP_050324_01_D06, Mouse strain C57BL/6J (56 days, male) 22.1

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