HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:80.2 nTPM
HPA Brain:139.9 nTPM
GTEx:80.2 nTPM
FANTOM5:214.1 Scaled Tags Per Million
Pig:201.9 nTPM
Mouse:510.5 nTPM
Allen mouse:14.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB004621Antibody CAB005887
Glial cells MediumNot detectedNot detectedNot detectedNot detected
Neuronal cells HighHighMediumHighHigh











HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 139.9
Sample id Sample description nTPM
Hippocampus
nTPM: 98.7
1898 Male, age 80, left hemisphere 137.0
2621 Female, age 67, right hemisphere 134.6
2529 Female, age 94, left hemisphere 96.1
1855 Male, age 76, left hemisphere 90.6
2148 Female, age 91, left hemisphere 83.2
1911 Female, age 85, right hemisphere 50.4
Dentate gyrus
nTPM: 102.1
2530 Female, age 94, left hemisphere 128.6
1927 Female, age 91, both hemispheres 124.5
2246 Female, age 85, both hemispheres 105.3
2531 Female, age 67, both hemispheres 91.9
2528 Male, age 74, both hemispheres 88.6
2010 Male, age 76, both hemispheres 73.8
Entorhinal gyrus
nTPM: 101.7
2764 Male, age 80, right hemisphere 131.1
1938 Female, age 85, left hemisphere 122.5
1787 Male, age 76, left hemisphere 104.6
2686 Male, age 75, right hemisphere 103.4
2613 Female, age 94, left hemisphere 98.2
2117 Female, age 91, right hemisphere 50.5
Hippocampus, CA1
nTPM: 103.6
2749 Male, age 80, left hemisphere 188.0
1873 Female, age 85, both hemispheres 104.6
2527 Male, age 74, both hemispheres 94.1
2045 Male, age 76, both hemispheres 73.5
2082 Female, age 91, right hemisphere 57.6
Hippocampus, CA2
nTPM: 99.2
1963 Male, age 80, left hemisphere 131.3
2437 Female, age 94, left hemisphere 130.9
1892 Male, age 76, both hemispheres 96.3
2249 Male, age 74, both hemispheres 86.5
1940 Female, age 85, left hemisphere 84.3
2113 Female, age 91, right hemisphere 65.7
Hippocampus, CA3
nTPM: 105.9
2861 Female, age 67, both hemispheres 134.8
2137 Male, age 80, left hemisphere 133.1
2436 Male, age 74, both hemispheres 124.6
2620 Female, age 94, left hemisphere 107.0
1891 Female, age 85, both hemispheres 70.5
1867 Male, age 76, both hemispheres 65.4
Parahippocampal cortex
nTPM: 124.2
2245 Female, age 91, both hemispheres 193.8
1850 Male, age 80, both hemispheres 156.2
2532 Female, age 72, left hemisphere 145.9
2622 Female, age 67, right hemisphere 139.0
2250 Female, age 67, right hemisphere 116.1
1933 Female, age 85, both hemispheres 112.7
1990 Female, age 91, right hemisphere 112.1
2693 Female, age 94, both hemispheres 103.2
2692 Male, age 74, both hemispheres 100.5
2018 Male, age 76, both hemispheres 62.2
Perirhinal gyrus
nTPM: 139.9
1847 Female, age 91, left hemisphere 180.1
1794 Male, age 80, right hemisphere 146.2
2521 Female, age 94, right hemisphere 132.4
2848 Male, age 76, right hemisphere 122.2
1841 Female, age 85, right hemisphere 118.5
Subiculum
nTPM: 103.0
2438 Female, age 94, left hemisphere 203.8
1977 Female, age 85, both hemispheres 113.7
1901 Male, age 80, both hemispheres 96.0
2619 Male, age 74, both hemispheres 94.2
2042 Male, age 76, both hemispheres 68.2
2729 Female, age 91, right hemisphere 41.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 80.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.2
Samples: 255

Max nTPM: 314.9
Min nTPM: 8.0
Std nTPM: 53.4
Median nTPM: 71.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 314.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 254.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 237.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 234.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 222.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 221.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 200.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 198.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 185.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 182.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 181.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 214.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 214.1
FF:10169-103B7 60 years, female 332.3
FF:10153-102I9 76 years, female 95.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 201.9
Pig sample Sample description nTPM
Subiculum
nTPM: 146.3
Samples: 4

Max nTPM: 199.4
Min nTPM: 123.6
Sample A Female 199.4
Sample B Female 130.0
Sample C Male 132.0
Sample D Male 123.6
Dorsal hippocampus
nTPM: 201.9
Samples: 4

Max nTPM: 281.7
Min nTPM: 132.4
Sample A Female 281.7
Sample B Female 206.5
Sample C Male 132.4
Sample D Male 186.9
Entorhinal cortex
nTPM: 156.2
Samples: 4

Max nTPM: 171.7
Min nTPM: 146.7
Sample A Female 171.7
Sample B Female 152.0
Sample C Male 154.4
Sample D Male 146.7
Ventral hippocampus
nTPM: 167.9
Samples: 4

Max nTPM: 213.5
Min nTPM: 103.3
Sample A Female 171.4
Sample B Female 103.3
Sample C Male 183.4
Sample D Male 213.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 510.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 494.6
Samples: 4

Max nTPM: 544.1
Min nTPM: 456.0
Sample A Male 457.1
Sample B Male 521.3
Sample C Female 456.0
Sample D Female 544.1
Hippocampal formation
nTPM: 510.5
Samples: 4

Max nTPM: 559.5
Min nTPM: 483.3
Sample A Male 502.1
Sample B Male 483.3
Sample C Female 559.5
Sample D Female 497.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 14.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.7
564648 Antisense, RP_040826_01_B04, Mouse strain C57BL/6J (56 days, male) 14.9
70616005 Antisense, RP_050725_01_D08, Mouse strain C57BL/6J (56 days, male) 14.6

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