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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • RBM48
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:13.2 nTPM
GTEx:8.3 nTPM
FANTOM5:107.8 Scaled Tags Per Million
Macaque:10.5 nTPM
Pig:10.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.2
Sample id Sample description nTPM
Substantia nigra
nTPM: 13.2
2583 Male, age 75, right hemisphere 14.9
2590 Female, age 75, unknown 14.4
1889 Female, age 72, unknown 14.2
2241 Male, age 72, unknown 14.1
2409 Female, age 72, unknown 14.0
1941 Male, age 53, unknown 13.9
1851 Male, age 51, unknown 12.5
2699 Male, age 18, unknown 12.4
1916 Female, age 42, unknown 11.1
2665 Male, age 74, both hemispheres 10.6

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 183

Max nTPM: 42.5
Min nTPM: 2.3
Std nTPM: 4.7
Median nTPM: 7.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 29.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 17.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 15.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 15.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 15.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 14.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 13.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 13.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 12.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 12.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 12.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 12.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 12.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 12.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 11.9
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 11.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 11.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 11.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 10.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 10.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 10.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 10.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 10.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 10.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 10.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 10.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 10.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 10.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 10.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 9.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 9.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 9.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 9.6
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 9.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 9.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 9.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 9.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 8.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 8.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 8.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 8.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 8.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 8.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 8.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 8.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 8.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 8.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 8.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 8.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 8.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 8.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 8.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 8.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 8.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 8.1
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 8.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 8.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 8.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 8.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 8.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 7.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 7.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 7.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 7.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 7.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 7.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 7.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 7.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 7.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 7.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 7.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 7.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 7.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 7.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 7.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 7.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 7.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 7.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 7.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 7.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 7.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 7.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 7.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 7.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 7.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 6.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 6.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 6.8
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 6.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 6.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 6.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 6.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 6.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 6.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 6.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 6.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 6.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 6.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.5
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 6.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 6.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 6.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 6.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 6.3
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 6.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 6.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 6.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 6.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 6.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 5.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 5.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 5.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 5.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 5.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 5.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 5.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 5.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 5.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 5.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 5.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 5.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 5.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 5.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 5.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 5.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 5.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 5.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 5.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 5.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 4.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 4.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 4.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 4.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 4.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 4.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 4.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 4.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 4.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 4.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 4.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 4.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 4.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 4.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 4.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 4.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 3.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 3.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 3.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 3.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 3.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 3.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 3.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.8
FF:10158-103A5 76 years, female 107.8

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 1

Max nTPM: 10.5
Min nTPM: 10.5
Sample A 10.5

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 3

Max nTPM: 11.0
Min nTPM: 9.9
Sample A Female 10.8
Sample B Female 9.9
Sample C Male 11.0

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