BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:179.0 nTPM
HPA Brain:346.3 nTPM
GTEx:179.0 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Mouse:512.7 nTPM
Rat:547.9 nTPM
Pig:723.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 346.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 209.2
2019 Male, age 18, unknown 267.7
1827 Male, age 72, unknown 266.5
2411 Female, age 72, unknown 258.1
2666 Male, age 74, left hemisphere 233.6
2219 Male, age 76, both hemispheres 228.2
1870 Female, age 42, unknown 179.4
2828 Female, age 72, unknown 173.8
1833 Male, age 53, unknown 163.9
2586 Male, age 75, left hemisphere 161.0
1830 Male, age 51, unknown 159.3
Dorsal raphe nucleus
nTPM: 255.7
2298 Female, age 72, unknown 346.9
2750 Male, age 76, both hemispheres 289.7
2047 Male, age 72, unknown 275.9
1828 Male, age 53, unknown 221.7
2016 Female, age 72, unknown 144.4
Inferior colliculus
nTPM: 198.9
2097 Female, age 72, unknown 237.5
2849 Male, age 72, unknown 189.8
1848 Female, age 42, unknown 189.1
1890 Male, age 53, unknown 179.1
Median raphe nucleus
nTPM: 346.3
2220 Male, age 76, midline 346.3
Periaquaductal grey, anterior
nTPM: 211.5
1795 Male, age 51, unknown 270.0
2502 Female, age 75, unknown 194.4
1947 Male, age 18, unknown 170.0
Periaquaductal grey, dorsal
nTPM: 203.8
1831 Male, age 72, unknown 221.9
1840 Male, age 53, unknown 208.7
2850 Male, age 76, both hemispheres 203.6
2464 Female, age 72, unknown 181.1
Periaquaductal grey, lateral
nTPM: 199.1
2272 Male, age 74, both hemispheres 241.4
2053 Male, age 18, unknown 185.5
2140 Male, age 76, both hemispheres 170.5
Pretectal area
nTPM: 293.1
1816 Male, age 51, unknown 459.2
1817 Female, age 42, unknown 409.1
2007 Male, age 72, unknown 404.5
1944 Female, age 72, unknown 371.3
1815 Male, age 53, unknown 345.4
2224 Female, age 72, unknown 281.1
2273 Male, age 74, both hemispheres 209.2
2825 Male, age 18, unknown 195.4
2407 Male, age 75, both hemispheres 191.8
2316 Male, age 76, right hemisphere 184.9
2667 Female, age 75, unknown 172.2
Red nucleus
nTPM: 157.5
2785 Male, age 18, unknown 274.0
2725 Female, age 75, unknown 226.6
2584 Male, age 75, left hemisphere 175.2
1821 Female, age 72, unknown 170.0
2823 Male, age 76, right hemisphere 144.9
2503 Female, age 72, unknown 141.4
1954 Female, age 42, unknown 134.7
2588 Male, age 74, left hemisphere 130.3
2769 Male, age 72, unknown 126.8
2227 Male, age 72, unknown 124.5
1865 Male, age 51, unknown 123.0
1904 Male, age 53, unknown 118.8
Substantia nigra
nTPM: 254.1
1941 Male, age 53, unknown 375.2
1889 Female, age 72, unknown 319.0
2665 Male, age 74, both hemispheres 278.1
1916 Female, age 42, unknown 261.4
2241 Male, age 72, unknown 259.1
2590 Female, age 75, unknown 234.1
2409 Female, age 72, unknown 225.9
1851 Male, age 51, unknown 223.8
2583 Male, age 75, right hemisphere 206.6
2699 Male, age 18, unknown 157.8
Superior colliculus
nTPM: 218.2
2087 Female, age 72, unknown 302.8
2261 Male, age 18, unknown 257.6
2668 Female, age 75, unknown 256.9
1796 Male, age 53, unknown 249.5
1895 Male, age 76, right hemisphere 231.8
2587 Male, age 74, left hemisphere 220.7
1839 Male, age 51, unknown 201.8
1913 Female, age 42, unknown 180.6
2664 Male, age 75, both hemispheres 149.5
1995 Male, age 72, unknown 131.4
Ventral tegmental area
nTPM: 234.8
2218 Male, age 76, both hemispheres 276.8
2223 Female, age 72, unknown 273.8
2410 Female, age 72, unknown 248.4
1915 Female, age 42, unknown 215.2
1942 Male, age 51, unknown 197.4
2021 Male, age 53, unknown 197.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 179.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.0
Samples: 183

Max nTPM: 1019.1
Min nTPM: 33.7
Std nTPM: 137.1
Median nTPM: 135.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1019.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 853.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 782.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 493.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 492.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 482.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 458.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 454.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 449.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 398.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 397.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.5
FF:10158-103A5 76 years, female 102.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 723.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 434.2
Samples: 3

Max nTPM: 566.3
Min nTPM: 282.4
Sample A Female 566.3
Sample B Female 282.4
Sample C Male 453.9
Midbrain
nTPM: 718.7
Samples: 3

Max nTPM: 1120.3
Min nTPM: 353.8
Sample B Female 353.8
Sample C Male 1120.3
Sample D Male 681.9
Periaqueductal gray
nTPM: 379.6
Samples: 3

Max nTPM: 497.7
Min nTPM: 317.2
Sample B Female 323.8
Sample C Male 497.7
Sample D Male 317.2
Superior colliculi
nTPM: 723.5
Samples: 4

Max nTPM: 1131.9
Min nTPM: 535.7
Sample A Female 667.3
Sample B Female 535.7
Sample C Male 1131.9
Sample D Male 559.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 512.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 512.7
Samples: 4

Max nTPM: 518.2
Min nTPM: 507.4
Sample A 507.4
Sample B 508.9
Sample C 518.2
Sample D 516.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 547.9
Rat sample Sample description nTPM
Midbrain
nTPM: 547.9
Samples: 4

Max nTPM: 561.9
Min nTPM: 533.5
Sample A 561.9
Sample A 559.4
Sample A 536.7
Sample A 533.5

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