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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:361.7 nTPM
GTEx:361.7 nTPM
FANTOM5:792.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB011596
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 361.7
Samples: 170

Max nTPM: 824.0
Min nTPM: 202.9
Std nTPM: 97.5
Median nTPM: 345.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 824.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 670.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 635.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 630.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 607.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 577.7
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 574.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 557.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 557.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 523.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 516.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 509.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 508.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 503.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 487.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 487.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 484.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 477.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 474.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 473.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 471.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 468.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 465.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 462.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 459.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 442.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 440.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 436.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 435.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 435.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 434.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 433.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 431.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 430.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 425.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 423.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 422.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 422.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 419.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 419.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 417.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 415.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 414.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 412.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 411.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 410.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 410.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 409.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 408.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 408.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 401.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 399.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 396.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 394.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 394.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 393.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 386.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 380.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 378.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 378.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 375.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 375.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 374.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 372.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 371.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 370.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 369.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 369.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 367.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 367.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 366.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 365.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 364.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 363.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 360.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 359.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 358.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 358.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 357.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 357.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 357.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 349.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 349.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 348.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 346.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 344.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 343.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 340.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 339.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 338.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 336.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 335.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 335.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 335.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 334.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 333.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 331.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 331.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 330.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 329.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 327.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 326.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 326.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 324.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 322.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 321.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 320.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 319.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 319.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 317.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 315.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 313.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 313.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 311.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 310.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 308.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 308.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 308.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 306.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 305.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 304.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 302.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 301.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 300.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 299.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 298.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 297.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 296.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 296.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 295.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 291.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 291.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 289.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 287.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 280.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 273.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 272.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 271.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 271.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 271.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 268.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 267.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 267.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 267.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 266.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 266.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 266.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 263.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 263.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 260.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 260.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 259.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 257.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 250.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 246.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 242.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 240.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 240.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 239.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 237.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 234.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 233.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 231.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 229.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 225.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 223.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 222.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 215.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 215.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 202.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

792.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 792.8
FF:10204-103F6 68 years, female 792.8

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