We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATF4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATF4
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:381.0 nTPM
HPA Brain:185.0 nTPM
GTEx:381.0 nTPM
FANTOM5:532.0 Scaled Tags Per Million
Pig:180.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 176.7
2565 Male, age 75, midline 196.0
1981 Female, age 72, midline 186.5
2816 Male, age 47, midline 176.3
2194 Female, age 79, both hemispheres 165.9
2048 Male, age 55, midline 158.9
Cervical spinal cord, dorsal horn
nTPM: 177.9
2296 Male, age 66, both hemispheres 246.4
2173 Female, age 72, unknown 202.4
2069 Male, age 47, both hemispheres 175.2
1877 Male, age 55, unknown 156.5
2297 Male, age 75, both hemispheres 151.5
2721 Male, age 90, both hemispheres 135.6
Cervical spinal cord, ventral horn
nTPM: 185.0
2098 Female, age 72, unknown 235.6
2809 Male, age 90, both hemispheres 214.1
2480 Male, age 75, both hemispheres 183.6
2295 Male, age 66, both hemispheres 169.2
2068 Male, age 55, unknown 155.1
2820 Female, age 79, both hemispheres 152.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

381.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 381.0
Samples: 204

Max nTPM: 857.1
Min nTPM: 196.0
Std nTPM: 101.0
Median nTPM: 367.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 857.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 705.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 699.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 673.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 644.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 636.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 607.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 597.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 580.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 577.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 550.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 540.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 540.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 540.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 538.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 529.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 529.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 524.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 514.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 514.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 507.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 503.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 503.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 495.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 495.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 495.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 489.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 487.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 483.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 477.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 472.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 468.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 468.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 468.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 464.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 463.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 460.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 459.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 459.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 457.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 455.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 453.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 452.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 450.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 448.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 445.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 443.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 441.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 439.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 433.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 431.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 427.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 424.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 424.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 423.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 421.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 420.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 420.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 418.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 416.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 411.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 410.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 409.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 409.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 407.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 404.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 403.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 403.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 403.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 401.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 400.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 399.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 396.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 396.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 395.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 394.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 393.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 392.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 392.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 391.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 391.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 391.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 390.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 388.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 386.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 383.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 382.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 382.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 380.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 380.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 380.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 379.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 379.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 376.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 376.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 375.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 372.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 372.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 371.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 368.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 367.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 367.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 366.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 366.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 365.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 364.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 363.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 363.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 362.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 361.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 360.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 358.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 358.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 357.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 355.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 355.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 353.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 353.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 352.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 350.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 349.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 348.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 347.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 347.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 344.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 344.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 342.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 341.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 339.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 339.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 337.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 336.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 335.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 334.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 333.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 332.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 331.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 331.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 330.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 327.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 326.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 325.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 322.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 321.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 320.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 320.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 319.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 319.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 318.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 317.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 315.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 315.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 314.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 312.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 311.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 310.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 308.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 308.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 306.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 299.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 297.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 295.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 294.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 291.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 290.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 288.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 286.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 285.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 285.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 282.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 282.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 281.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 281.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 279.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 278.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 278.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 276.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 275.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 275.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 273.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 270.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 267.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 266.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 263.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 260.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 260.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 259.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 257.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 257.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 257.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 254.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 253.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 250.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 250.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 249.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 248.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 248.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 243.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 241.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 237.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 224.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 212.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 210.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 196.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

532.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 532.0
FF:10181-103D1 60 years, female 604.2
FF:10159-103A6 76 years, female 459.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 180.4
Samples: 4

Max nTPM: 254.4
Min nTPM: 135.8
Sample A Female 135.8
Sample B Female 165.9
Sample C Male 254.4
Sample D Male 165.6
Ventral spinal cord
nTPM: 157.8
Samples: 4

Max nTPM: 185.7
Min nTPM: 126.0
Sample A Female 126.0
Sample B Female 143.3
Sample C Male 185.7
Sample D Male 176.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo