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  • CDC42EP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:122.5 nTPM
HPA Brain:132.6 nTPM
GTEx:122.5 nTPM
FANTOM5:183.2 Scaled Tags Per Million
Pig:61.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.2
2194 Female, age 79, both hemispheres 132.1
2816 Male, age 47, midline 126.8
1981 Female, age 72, midline 117.4
2565 Male, age 75, midline 113.4
2048 Male, age 55, midline 101.1
Cervical spinal cord, dorsal horn
nTPM: 110.8
2173 Female, age 72, unknown 160.5
2296 Male, age 66, both hemispheres 156.1
1877 Male, age 55, unknown 101.9
2069 Male, age 47, both hemispheres 99.4
2721 Male, age 90, both hemispheres 80.6
2297 Male, age 75, both hemispheres 66.6
Cervical spinal cord, ventral horn
nTPM: 132.6
2068 Male, age 55, unknown 160.2
2820 Female, age 79, both hemispheres 160.2
2809 Male, age 90, both hemispheres 123.7
2480 Male, age 75, both hemispheres 118.5
2295 Male, age 66, both hemispheres 117.3
2098 Female, age 72, unknown 115.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 122.5
Samples: 204

Max nTPM: 235.0
Min nTPM: 28.2
Std nTPM: 39.4
Median nTPM: 119.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 235.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 234.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 220.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 219.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 214.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 203.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 202.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 202.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 196.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 194.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 194.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 191.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 190.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 189.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 189.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 187.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 184.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 183.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 183.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 181.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 177.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 172.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 170.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 170.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 169.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 168.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 168.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 166.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 165.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 163.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 163.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 163.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 161.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 160.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 159.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 157.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 157.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 156.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 155.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 155.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 155.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 153.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 153.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 153.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 152.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 152.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 151.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 149.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 148.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 148.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 148.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 147.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 146.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 146.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 145.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 144.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 143.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 142.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 142.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 141.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 138.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 137.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 136.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 136.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 135.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 135.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 135.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 134.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 131.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 130.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 129.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 126.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 126.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 126.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 126.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 125.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 125.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 125.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 125.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 124.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 124.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 124.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 124.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 123.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 123.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 123.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 122.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 121.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 121.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 121.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 119.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 119.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 119.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 117.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 117.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 117.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 116.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 116.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 113.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 113.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 112.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 112.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 112.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 111.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 110.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 110.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 110.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 109.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 109.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 109.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 109.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 108.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 108.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 107.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 107.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 105.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 105.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 105.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 104.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 104.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 103.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 103.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 103.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 102.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 102.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 101.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 101.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 100.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 100.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 100.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 99.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 98.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 97.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 96.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 96.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 95.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 95.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 95.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 94.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 92.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 91.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 91.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 89.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 88.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 88.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 87.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 87.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 86.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 83.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 83.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 81.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 79.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 78.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 78.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 76.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 75.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 73.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 73.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 72.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 72.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 69.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 69.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 69.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 69.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 69.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 68.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 61.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 61.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 60.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 59.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 57.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 56.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 48.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 28.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 183.2
FF:10181-103D1 60 years, female 226.2
FF:10159-103A6 76 years, female 140.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.9
Samples: 4

Max nTPM: 61.1
Min nTPM: 52.0
Sample A Female 52.6
Sample B Female 52.0
Sample C Male 53.8
Sample D Male 61.1
Ventral spinal cord
nTPM: 61.4
Samples: 4

Max nTPM: 69.8
Min nTPM: 54.0
Sample A Female 67.4
Sample B Female 54.2
Sample C Male 69.8
Sample D Male 54.0

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