MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.6 nTPM
HPA Brain:61.4 nTPM
GTEx:83.6 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:63.5 nTPM
Mouse:172.9 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2411 Female, age 72, unknown 63.1
2019 Male, age 18, unknown 62.3
1827 Male, age 72, unknown 57.3
1870 Female, age 42, unknown 53.3
2828 Female, age 72, unknown 49.6
1833 Male, age 53, unknown 48.3
2219 Male, age 76, both hemispheres 48.3
1830 Male, age 51, unknown 46.7
2666 Male, age 74, left hemisphere 41.8
2586 Male, age 75, left hemisphere 36.1
Dorsal raphe nucleus
nTPM: 56.5
2298 Female, age 72, unknown 66.9
1828 Male, age 53, unknown 56.5
2047 Male, age 72, unknown 55.3
2750 Male, age 76, both hemispheres 54.3
2016 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 50.7
2097 Female, age 72, unknown 59.0
1890 Male, age 53, unknown 49.8
1848 Female, age 42, unknown 47.5
2849 Male, age 72, unknown 46.6
Median raphe nucleus
nTPM: 58.2
2220 Male, age 76, midline 58.2
Periaquaductal grey, anterior
nTPM: 61.4
1947 Male, age 18, unknown 68.6
1795 Male, age 51, unknown 57.9
2502 Female, age 75, unknown 57.6
Periaquaductal grey, dorsal
nTPM: 48.8
2850 Male, age 76, both hemispheres 51.9
1840 Male, age 53, unknown 49.7
2464 Female, age 72, unknown 46.9
1831 Male, age 72, unknown 46.6
Periaquaductal grey, lateral
nTPM: 51.7
2272 Male, age 74, both hemispheres 58.0
2140 Male, age 76, both hemispheres 48.7
2053 Male, age 18, unknown 48.3
Pretectal area
nTPM: 59.9
2667 Female, age 75, unknown 66.2
1817 Female, age 42, unknown 65.1
1944 Female, age 72, unknown 64.6
1816 Male, age 51, unknown 64.4
2273 Male, age 74, both hemispheres 63.4
2007 Male, age 72, unknown 62.5
2224 Female, age 72, unknown 58.1
1815 Male, age 53, unknown 57.5
2316 Male, age 76, right hemisphere 57.5
2407 Male, age 75, both hemispheres 53.4
2825 Male, age 18, unknown 46.4
Red nucleus
nTPM: 53.8
1821 Female, age 72, unknown 66.7
2785 Male, age 18, unknown 59.4
2823 Male, age 76, right hemisphere 56.6
2503 Female, age 72, unknown 55.7
1865 Male, age 51, unknown 55.6
2769 Male, age 72, unknown 54.5
2725 Female, age 75, unknown 53.5
1904 Male, age 53, unknown 53.2
2227 Male, age 72, unknown 52.7
1954 Female, age 42, unknown 51.5
2588 Male, age 74, left hemisphere 45.7
2584 Male, age 75, left hemisphere 40.3
Substantia nigra
nTPM: 55.4
1916 Female, age 42, unknown 73.7
1851 Male, age 51, unknown 62.3
1941 Male, age 53, unknown 62.2
1889 Female, age 72, unknown 61.7
2241 Male, age 72, unknown 58.0
2665 Male, age 74, both hemispheres 52.0
2590 Female, age 75, unknown 49.9
2699 Male, age 18, unknown 46.9
2409 Female, age 72, unknown 46.4
2583 Male, age 75, right hemisphere 41.2
Superior colliculus
nTPM: 52.9
1895 Male, age 76, right hemisphere 58.8
1796 Male, age 53, unknown 57.1
2587 Male, age 74, left hemisphere 55.4
2668 Female, age 75, unknown 55.1
2261 Male, age 18, unknown 54.1
1913 Female, age 42, unknown 53.8
2087 Female, age 72, unknown 53.3
1839 Male, age 51, unknown 49.2
1995 Male, age 72, unknown 47.3
2664 Male, age 75, both hemispheres 44.6
Ventral tegmental area
nTPM: 56.1
2410 Female, age 72, unknown 65.7
1915 Female, age 42, unknown 59.4
2218 Male, age 76, both hemispheres 57.1
2223 Female, age 72, unknown 53.3
1942 Male, age 51, unknown 52.9
2021 Male, age 53, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.6
Samples: 183

Max nTPM: 135.5
Min nTPM: 50.3
Std nTPM: 15.5
Median nTPM: 82.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 129.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 122.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 120.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 119.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 118.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 114.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 113.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 112.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.4
FF:10158-103A5 76 years, female 114.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.0
Samples: 4

Max nTPM: 72.5
Min nTPM: 46.2
Sample A Female 72.5
Sample B Female 46.2
Sample C Male 55.8
Sample D Male 49.5
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 63.4
Min nTPM: 56.3
Sample A Female 60.6
Sample B Female 59.3
Sample C Male 56.3
Sample D Male 63.4
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 60.0
Min nTPM: 49.9
Sample B Female 49.9
Sample C Male 60.0
Sample D Male 54.7
Superior colliculi
nTPM: 63.5
Samples: 4

Max nTPM: 76.3
Min nTPM: 50.5
Sample A Female 76.3
Sample B Female 50.5
Sample C Male 65.1
Sample D Male 62.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 172.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 172.9
Samples: 4

Max nTPM: 177.6
Min nTPM: 166.3
Sample A Male 175.6
Sample B Male 171.9
Sample C Female 166.3
Sample D Female 177.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
68798813 Antisense, RP_050217_01_D02, Mouse strain C57BL/6J (56 days, male) 9.1

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