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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:388.6 nTPM
HPA Brain:355.2 nTPM
GTEx:388.6 nTPM
FANTOM5:435.1 Scaled Tags Per Million
Pig:354.7 nTPM
Mouse:373.5 nTPM
Allen mouse:25.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.2
Sample id Sample description nTPM
Amygdala
nTPM: 230.2
2517 Female, age 94, left hemisphere 270.2
2814 Male, age 76, right hemisphere 266.3
1987 Female, age 91, left hemisphere 257.2
2514 Male, age 75, right hemisphere 202.3
2695 Female, age 67, right hemisphere 155.2
Basal amygdala
nTPM: 355.2
2243 Female, age 91, right hemisphere 546.3
2110 Male, age 80, left hemisphere 437.2
2685 Female, age 94, left hemisphere 405.0
1955 Male, age 76, both hemispheres 312.5
2609 Male, age 75, right hemisphere 255.4
2827 Female, age 67, right hemisphere 174.7
Central amygdala
nTPM: 246.6
2239 Male, age 80, left hemisphere 364.5
2826 Female, age 94, left hemisphere 250.9
1905 Male, age 76, both hemispheres 216.8
2701 Female, age 91, right hemisphere 208.9
2515 Male, age 75, right hemisphere 192.0
Corticomedial amygdala
nTPM: 337.6
2829 Male, age 80, left hemisphere 519.2
2429 Female, age 94, left hemisphere 398.6
2242 Female, age 91, right hemisphere 328.4
2240 Male, age 76, both hemispheres 300.1
2428 Male, age 75, right hemisphere 244.9
2535 Female, age 67, right hemisphere 234.2
Lateral amygdala
nTPM: 242.5
2534 Female, age 94, left hemisphere 334.5
1883 Male, age 76, both hemispheres 298.3
2256 Male, age 80, left hemisphere 277.5
2255 Female, age 91, right hemisphere 214.3
2516 Male, age 75, right hemisphere 210.8
2830 Female, age 67, right hemisphere 119.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 388.6
Samples: 181

Max nTPM: 964.6
Min nTPM: 132.5
Std nTPM: 188.2
Median nTPM: 351.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 964.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 964.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 959.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 911.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 871.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 853.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 807.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 762.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 757.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 750.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 750.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 749.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 715.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 703.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 702.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 693.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 685.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 680.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 679.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 671.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 658.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 634.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 623.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 621.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 612.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 609.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 588.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 578.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 574.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 561.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 559.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 556.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 554.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 551.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 536.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 529.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 529.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 525.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 525.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 519.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 512.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 510.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 495.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 494.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 493.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 493.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 481.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 476.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 475.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 474.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 468.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 458.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 451.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 448.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 445.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 444.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 440.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 434.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 430.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 426.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 425.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 424.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 424.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 423.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 423.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 423.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 420.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 417.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 414.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 409.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 408.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 406.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 396.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 393.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 392.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 388.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 385.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 385.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 383.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 380.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 379.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 379.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 378.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 378.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 374.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 358.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 354.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 354.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 353.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 352.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 351.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 348.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 334.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 333.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 332.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 331.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 329.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 327.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 326.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 326.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 319.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 318.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 317.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 317.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 317.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 317.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 312.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 310.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 302.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 301.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 301.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 297.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 296.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 293.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 292.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 286.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 285.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 279.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 274.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 272.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 271.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 268.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 268.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 267.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 265.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 260.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 257.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 255.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 251.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 250.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 249.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 247.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 247.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 244.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 239.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 239.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 237.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 231.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 228.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 225.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 221.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 218.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 217.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 212.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 210.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 203.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 201.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 200.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 200.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 200.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 199.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 199.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 197.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 195.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 195.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 195.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 195.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 188.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 186.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 186.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 181.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 180.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 178.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 177.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 177.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 176.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 166.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 158.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 157.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 157.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 157.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 153.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 151.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 149.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 148.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 132.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

435.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 435.1
FF:10151-102I7 76 years, female 435.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.7
Pig sample Sample description nTPM
Amygdala
nTPM: 354.7
Samples: 4

Max nTPM: 500.7
Min nTPM: 276.8
Sample A Female 500.7
Sample B Female 287.4
Sample C Male 276.8
Sample D Male 353.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 373.5
Samples: 4

Max nTPM: 399.3
Min nTPM: 344.4
Sample A Male 382.6
Sample B Male 399.3
Sample C Female 367.5
Sample D Female 344.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.3
69838711 Antisense, RP_050317_04_F05, Mouse strain C57BL/6J (56 days, male) 28.0
73718053 Antisense, RP_051121_04_C07, Mouse strain C57BL/6J (56 days, male) 22.5

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