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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.5
Sample id
Sample description
nTPM
Amygdala nTPM: 18.5
1987
Female, age 91, left hemisphere
22.2
2514
Male, age 75, right hemisphere
20.8
2814
Male, age 76, right hemisphere
20.5
2695
Female, age 67, right hemisphere
14.8
2517
Female, age 94, left hemisphere
14.3
Basal amygdala nTPM: 12.5
2609
Male, age 75, right hemisphere
16.7
1955
Male, age 76, both hemispheres
16.5
2243
Female, age 91, right hemisphere
14.8
2110
Male, age 80, left hemisphere
14.3
2685
Female, age 94, left hemisphere
8.5
2827
Female, age 67, right hemisphere
4.4
Central amygdala nTPM: 14.3
1905
Male, age 76, both hemispheres
21.9
2515
Male, age 75, right hemisphere
15.4
2701
Female, age 91, right hemisphere
14.9
2239
Male, age 80, left hemisphere
12.2
2826
Female, age 94, left hemisphere
7.1
Corticomedial amygdala nTPM: 14.1
2428
Male, age 75, right hemisphere
17.2
2242
Female, age 91, right hemisphere
16.1
2829
Male, age 80, left hemisphere
15.7
2429
Female, age 94, left hemisphere
15.1
2240
Male, age 76, both hemispheres
14.9
2535
Female, age 67, right hemisphere
5.7
Lateral amygdala nTPM: 10.9
1883
Male, age 76, both hemispheres
18.4
2256
Male, age 80, left hemisphere
13.7
2516
Male, age 75, right hemisphere
12.1
2255
Female, age 91, right hemisphere
11.5
2534
Female, age 94, left hemisphere
6.5
2830
Female, age 67, right hemisphere
3.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 26.0
Samples: 181
Max nTPM: 62.1
Min nTPM: 1.7
Std nTPM: 11.2
Median nTPM: 25.7
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
62.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
55.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
53.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
52.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
51.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
49.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
48.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
47.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
47.7
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
47.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
45.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
45.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
45.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
44.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
43.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
43.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
43.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
42.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
42.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
41.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
41.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
41.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
40.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
39.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
39.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
39.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
38.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
38.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
38.4
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
37.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
37.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
36.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
36.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
36.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
34.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
34.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
34.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
33.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
33.6
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
33.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
33.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
33.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
32.6
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
32.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
32.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
32.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
31.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
31.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
31.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
31.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
31.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
31.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
31.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
30.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
30.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
30.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
30.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
30.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
30.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
29.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
29.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
29.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
29.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
29.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
29.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
29.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
28.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
28.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
28.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
28.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
28.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
28.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
27.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
27.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
27.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
27.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
27.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
27.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
27.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
26.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
26.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
26.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
26.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
26.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
26.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
26.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
26.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
26.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
26.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
25.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
25.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
25.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
25.5
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
25.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
24.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
24.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
24.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
24.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
23.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
23.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
23.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
23.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
23.4
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
23.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
23.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
23.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
23.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
23.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
23.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
23.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
23.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
22.6
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
22.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
21.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
21.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
21.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
21.1
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
21.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
20.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
20.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
20.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
20.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
20.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
20.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
20.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
19.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
19.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
19.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
18.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
18.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
18.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
18.3
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
18.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
18.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
17.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
17.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
17.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
17.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
17.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
16.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
16.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
16.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
16.4
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
15.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
15.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
15.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
15.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
15.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
14.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
14.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
14.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
14.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
14.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
13.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
13.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
13.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
13.5
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
13.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
13.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
12.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
12.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
12.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
12.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
12.1
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
11.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
11.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
11.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
11.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
10.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
10.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
10.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
10.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
9.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
9.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
9.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
6.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
6.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
6.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
6.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
5.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
1.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.5
Pig sample
Sample description
nTPM
Amygdala nTPM: 6.5
Samples: 4
Max nTPM: 7.6
Min nTPM: 4.9
Sample A
Female
7.6
Sample B
Female
7.5
Sample C
Male
6.1
Sample D
Male
4.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 2.0
Samples: 4
Max nTPM: 2.9
Min nTPM: 0.9
Sample A
Male
2.9
Sample B
Male
0.9
Sample C
Female
2.6
Sample D
Female
1.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
