MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:37.9 nTPM
GTEx:32.9 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:19.7 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2828 Female, age 72, unknown 21.0
2586 Male, age 75, left hemisphere 18.4
1870 Female, age 42, unknown 17.8
1833 Male, age 53, unknown 17.6
1827 Male, age 72, unknown 17.4
2411 Female, age 72, unknown 15.6
1830 Male, age 51, unknown 15.3
2219 Male, age 76, both hemispheres 11.7
2019 Male, age 18, unknown 11.2
2666 Male, age 74, left hemisphere 10.3
Dorsal raphe nucleus
nTPM: 33.6
2298 Female, age 72, unknown 48.0
2016 Female, age 72, unknown 37.4
1828 Male, age 53, unknown 32.6
2047 Male, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 18.2
Inferior colliculus
nTPM: 29.0
1848 Female, age 42, unknown 33.0
2097 Female, age 72, unknown 28.6
2849 Male, age 72, unknown 28.3
1890 Male, age 53, unknown 26.2
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Periaquaductal grey, anterior
nTPM: 23.1
1947 Male, age 18, unknown 27.7
1795 Male, age 51, unknown 23.8
2502 Female, age 75, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 36.3
1840 Male, age 53, unknown 47.2
2850 Male, age 76, both hemispheres 45.6
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 25.0
Periaquaductal grey, lateral
nTPM: 37.9
2140 Male, age 76, both hemispheres 44.5
2272 Male, age 74, both hemispheres 36.0
2053 Male, age 18, unknown 33.3
Pretectal area
nTPM: 22.4
2273 Male, age 74, both hemispheres 44.2
2224 Female, age 72, unknown 29.5
2825 Male, age 18, unknown 28.1
2667 Female, age 75, unknown 22.5
2316 Male, age 76, right hemisphere 22.2
1944 Female, age 72, unknown 22.0
1816 Male, age 51, unknown 18.7
1817 Female, age 42, unknown 18.1
1815 Male, age 53, unknown 16.6
2407 Male, age 75, both hemispheres 14.8
2007 Male, age 72, unknown 9.8
Red nucleus
nTPM: 16.4
2725 Female, age 75, unknown 22.0
1821 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 20.9
2823 Male, age 76, right hemisphere 20.6
2769 Male, age 72, unknown 19.5
2503 Female, age 72, unknown 18.4
2227 Male, age 72, unknown 18.3
1865 Male, age 51, unknown 15.4
1904 Male, age 53, unknown 15.1
2588 Male, age 74, left hemisphere 9.1
2584 Male, age 75, left hemisphere 8.5
2785 Male, age 18, unknown 7.4
Substantia nigra
nTPM: 22.9
2699 Male, age 18, unknown 37.6
2241 Male, age 72, unknown 30.6
1916 Female, age 42, unknown 29.4
2409 Female, age 72, unknown 23.9
1851 Male, age 51, unknown 22.4
2590 Female, age 75, unknown 20.2
1941 Male, age 53, unknown 19.7
1889 Female, age 72, unknown 19.2
2583 Male, age 75, right hemisphere 14.0
2665 Male, age 74, both hemispheres 12.2
Superior colliculus
nTPM: 19.9
1995 Male, age 72, unknown 25.4
2261 Male, age 18, unknown 21.5
2587 Male, age 74, left hemisphere 21.2
1895 Male, age 76, right hemisphere 21.1
1796 Male, age 53, unknown 20.7
1839 Male, age 51, unknown 19.2
2087 Female, age 72, unknown 18.5
2668 Female, age 75, unknown 17.9
2664 Male, age 75, both hemispheres 17.1
1913 Female, age 42, unknown 16.7
Ventral tegmental area
nTPM: 20.3
1915 Female, age 42, unknown 26.6
1942 Male, age 51, unknown 21.6
2218 Male, age 76, both hemispheres 20.3
2410 Female, age 72, unknown 20.0
2021 Male, age 53, unknown 19.1
2223 Female, age 72, unknown 14.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 183

Max nTPM: 143.1
Min nTPM: 2.6
Std nTPM: 19.4
Median nTPM: 29.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 143.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 95.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 80.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 78.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 74.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 71.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 70.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.1
Sample A Female 12.3
Sample B Female 9.1
Sample C Male 9.1
Sample D Male 9.2
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 17.0
Min nTPM: 6.8
Sample A Female 8.0
Sample B Female 17.0
Sample C Male 8.6
Sample D Male 6.8
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 23.0
Min nTPM: 16.1
Sample B Female 23.0
Sample C Male 20.1
Sample D Male 16.1
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 10.4
Min nTPM: 3.8
Sample A Female 10.4
Sample B Female 3.8
Sample C Male 7.2
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.6
Sample A Male 19.4
Sample B Male 19.2
Sample C Female 18.6
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68410393 Antisense, RP_041214_01_G09, Mouse strain C57BL/6J (56 days, male) 0.4

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