A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.3
nTPM
Monaco:
31.0
nTPM
Schmiedel:
19.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.3
HPA sample
nTPM
Classical monocyte nTPM: 37.3
Samples: 6
Max nTPM: 60.0
Min nTPM: 24.7
P10809_1003
24.7
P10809_1020
36.6
P10809_1039
60.0
P10809_1058
29.8
P10809_1080
31.6
P10809_1107
41.2
Intermediate monocyte nTPM: 33.4
Samples: 6
Max nTPM: 50.8
Min nTPM: 22.5
P10809_1004
22.5
P10809_1023
50.8
P10809_1042
32.7
P10809_1061
28.5
P10809_1081
30.6
P10809_1108
35.1
Non-classical monocyte nTPM: 32.3
Samples: 5
Max nTPM: 40.4
Min nTPM: 23.8
P10809_1005
23.8
P10809_1053
33.2
P10809_1072
35.7
P10809_1082
28.3
P10809_1109
40.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.0
Monaco sample
nTPM
Classical monocyte nTPM: 26.5
Samples: 4
Max nTPM: 38.9
Min nTPM: 20.0
RHH5313_R3680
24.7
RHH5221_R3593
22.2
RHH5250_R3622
38.9
RHH5279_R3651
20.0
Intermediate monocyte nTPM: 31.0
Samples: 4
Max nTPM: 56.7
Min nTPM: 17.3
RHH5314_R3681
56.7
RHH5222_R3594
17.3
RHH5251_R3623
26.6
RHH5280_R3652
23.4
Non-classical monocyte nTPM: 19.7
Samples: 4
Max nTPM: 26.0
Min nTPM: 13.3
RHH5315_R3682
26.0
RHH5223_R3595
13.3
RHH5252_R3624
20.4
RHH5281_R3653
19.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.7
Schmiedel sample id
TPM
Classical monocyte TPM: 16.5
Samples: 91
Max TPM: 21.7
Min TPM: 10.9
MONOCYTES_1
21.7
MONOCYTES_2
21.3
MONOCYTES_3
20.6
MONOCYTES_4
20.4
MONOCYTES_5
20.3
MONOCYTES_6
19.9
MONOCYTES_7
19.6
MONOCYTES_8
19.5
MONOCYTES_9
18.9
MONOCYTES_10
18.9
MONOCYTES_11
18.8
MONOCYTES_12
18.8
MONOCYTES_13
18.8
MONOCYTES_14
18.6
MONOCYTES_15
18.4
MONOCYTES_16
18.3
MONOCYTES_17
18.2
MONOCYTES_18
18.2
MONOCYTES_19
18.0
MONOCYTES_20
18.0
MONOCYTES_21
18.0
MONOCYTES_22
17.9
MONOCYTES_23
17.6
MONOCYTES_24
17.5
MONOCYTES_25
17.4
MONOCYTES_26
17.4
MONOCYTES_27
17.3
MONOCYTES_28
17.2
MONOCYTES_29
17.2
MONOCYTES_30
17.1
MONOCYTES_31
17.1
MONOCYTES_32
17.0
MONOCYTES_33
17.0
MONOCYTES_34
17.0
MONOCYTES_35
17.0
MONOCYTES_36
16.9
MONOCYTES_37
16.9
MONOCYTES_38
16.8
MONOCYTES_39
16.7
MONOCYTES_40
16.7
MONOCYTES_41
16.6
MONOCYTES_42
16.6
MONOCYTES_43
16.6
MONOCYTES_44
16.5
MONOCYTES_45
16.5
MONOCYTES_46
16.5
MONOCYTES_47
16.5
MONOCYTES_48
16.5
MONOCYTES_49
16.4
MONOCYTES_50
16.2
MONOCYTES_51
16.2
MONOCYTES_52
16.2
MONOCYTES_53
16.1
MONOCYTES_54
16.1
MONOCYTES_55
16.0
MONOCYTES_56
15.9
MONOCYTES_57
15.8
MONOCYTES_58
15.6
MONOCYTES_59
15.5
MONOCYTES_60
15.5
MONOCYTES_61
15.5
MONOCYTES_62
15.4
MONOCYTES_63
15.4
MONOCYTES_64
15.4
MONOCYTES_65
15.4
MONOCYTES_66
15.3
MONOCYTES_67
15.3
MONOCYTES_68
15.3
MONOCYTES_69
15.3
MONOCYTES_70
15.2
MONOCYTES_71
15.2
MONOCYTES_72
15.1
MONOCYTES_73
14.9
MONOCYTES_74
14.9
MONOCYTES_75
14.8
MONOCYTES_76
14.7
MONOCYTES_77
14.7
MONOCYTES_78
14.7
MONOCYTES_79
14.6
MONOCYTES_80
14.6
MONOCYTES_81
14.5
MONOCYTES_82
14.5
MONOCYTES_83
14.3
MONOCYTES_84
13.9
MONOCYTES_85
13.9
MONOCYTES_86
13.8
MONOCYTES_87
13.5
MONOCYTES_88
13.3
MONOCYTES_89
13.3
MONOCYTES_90
11.6
MONOCYTES_91
10.9
Show allShow less
Non-classical monocyte TPM: 19.7
Samples: 90
Max TPM: 29.4
Min TPM: 14.2
M2_1
29.4
M2_2
24.1
M2_3
24.1
M2_4
23.4
M2_5
23.3
M2_6
23.1
M2_7
23.0
M2_8
23.0
M2_9
22.7
M2_10
22.2
M2_11
22.1
M2_12
21.9
M2_13
21.8
M2_14
21.8
M2_15
21.8
M2_16
21.7
M2_17
21.3
M2_18
21.3
M2_19
21.2
M2_20
21.1
M2_21
21.1
M2_22
21.0
M2_23
21.0
M2_24
21.0
M2_25
20.9
M2_26
20.8
M2_27
20.8
M2_28
20.6
M2_29
20.6
M2_30
20.5
M2_31
20.4
M2_32
20.2
M2_33
20.2
M2_34
20.2
M2_35
20.2
M2_36
20.2
M2_37
20.1
M2_38
20.1
M2_39
19.9
M2_40
19.9
M2_41
19.8
M2_42
19.8
M2_43
19.8
M2_44
19.7
M2_45
19.7
M2_46
19.7
M2_47
19.7
M2_48
19.7
M2_49
19.7
M2_50
19.7
M2_51
19.6
M2_52
19.5
M2_53
19.5
M2_54
19.4
M2_55
19.4
M2_56
19.3
M2_57
19.0
M2_58
19.0
M2_59
18.9
M2_60
18.7
M2_61
18.7
M2_62
18.6
M2_63
18.6
M2_64
18.4
M2_65
18.4
M2_66
18.1
M2_67
18.1
M2_68
18.1
M2_69
18.0
M2_70
17.8
M2_71
17.6
M2_72
17.5
M2_73
17.5
M2_74
17.3
M2_75
17.1
M2_76
17.1
M2_77
17.1
M2_78
17.0
M2_79
16.7
M2_80
16.7
M2_81
16.6
M2_82
16.6
M2_83
16.6
M2_84
16.5
M2_85
16.3
M2_86
16.3
M2_87
16.2
M2_88
16.2
M2_89
15.1
M2_90
14.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
