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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:65.0 nTPM
HPA Brain:51.1 nTPM
GTEx:65.0 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:61.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 36.8
2816 Male, age 47, midline 39.5
1981 Female, age 72, midline 39.0
2048 Male, age 55, midline 36.9
2194 Female, age 79, both hemispheres 34.4
2565 Male, age 75, midline 34.0
Cervical spinal cord, dorsal horn
nTPM: 40.3
2173 Female, age 72, unknown 50.3
2296 Male, age 66, both hemispheres 46.8
2069 Male, age 47, both hemispheres 40.9
1877 Male, age 55, unknown 37.2
2297 Male, age 75, both hemispheres 36.4
2721 Male, age 90, both hemispheres 29.9
Cervical spinal cord, ventral horn
nTPM: 51.1
2480 Male, age 75, both hemispheres 62.5
2809 Male, age 90, both hemispheres 57.5
2295 Male, age 66, both hemispheres 53.7
2098 Female, age 72, unknown 48.4
2068 Male, age 55, unknown 44.1
2820 Female, age 79, both hemispheres 40.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 65.0
Samples: 204

Max nTPM: 125.5
Min nTPM: 25.0
Std nTPM: 18.4
Median nTPM: 62.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 125.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 117.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 112.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 109.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 109.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 102.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 100.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 100.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 100.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 98.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 97.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 95.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 95.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 94.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 94.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 93.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 91.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 90.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 90.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 88.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 88.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 88.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 88.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 87.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 87.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 87.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 85.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 85.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 85.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 84.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 84.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 84.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 84.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 84.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 83.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 83.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 82.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 81.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 80.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 80.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 80.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 79.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 79.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 79.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 79.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 78.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 77.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 77.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 76.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 75.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 75.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 74.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 74.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 73.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 73.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 72.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 72.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 71.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 71.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 71.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 71.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 71.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 71.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 71.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 70.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 70.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 70.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 69.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 69.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 68.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 68.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 67.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 67.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 67.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 67.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 67.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 66.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 66.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 65.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 65.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 65.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 64.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 64.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 64.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 64.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 64.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 63.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 63.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 63.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 63.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 62.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 62.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 62.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 62.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 62.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 61.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 61.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 60.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 60.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 60.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 59.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 59.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 59.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 59.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 59.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 59.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 58.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 58.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 58.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 57.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 57.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 57.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 57.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 56.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 56.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 56.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 56.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 56.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 56.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 55.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 55.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 55.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 55.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 54.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 54.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 54.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 53.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 53.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 53.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 53.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 53.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 53.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 52.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 52.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 52.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 52.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 52.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 51.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 51.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 51.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 51.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 51.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 51.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 51.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 51.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 50.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 50.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 49.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 49.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 48.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 47.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 47.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 46.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 45.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 44.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 44.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 44.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 43.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 43.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 42.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 42.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 41.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 41.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 41.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 41.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 40.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 39.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 35.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 35.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 32.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 32.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 31.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 31.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 31.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 30.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 30.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 28.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 25.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 63.8
FF:10159-103A6 76 years, female 72.1
FF:10181-103D1 60 years, female 55.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 57.8
Samples: 4

Max nTPM: 68.5
Min nTPM: 48.4
Sample A Female 48.4
Sample B Female 68.5
Sample C Male 61.2
Sample D Male 53.2
Ventral spinal cord
nTPM: 61.8
Samples: 4

Max nTPM: 73.1
Min nTPM: 56.0
Sample A Female 58.7
Sample B Female 59.5
Sample C Male 56.0
Sample D Male 73.1

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