MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA Brain:45.9 nTPM
GTEx:43.9 nTPM
FANTOM5:56.9 Scaled Tags Per Million
Pig:52.2 nTPM
Mouse:60.8 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.1
1870 Female, age 42, unknown 48.5
1830 Male, age 51, unknown 46.2
2666 Male, age 74, left hemisphere 44.6
1833 Male, age 53, unknown 44.0
2411 Female, age 72, unknown 43.5
2019 Male, age 18, unknown 38.5
2586 Male, age 75, left hemisphere 36.1
2828 Female, age 72, unknown 34.2
2219 Male, age 76, both hemispheres 32.9
1827 Male, age 72, unknown 32.6
Dorsal raphe nucleus
nTPM: 34.8
2750 Male, age 76, both hemispheres 43.1
2016 Female, age 72, unknown 35.2
1828 Male, age 53, unknown 34.3
2047 Male, age 72, unknown 32.1
2298 Female, age 72, unknown 29.1
Inferior colliculus
nTPM: 32.3
1890 Male, age 53, unknown 35.2
1848 Female, age 42, unknown 34.3
2849 Male, age 72, unknown 29.9
2097 Female, age 72, unknown 29.6
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 34.8
2502 Female, age 75, unknown 34.8
1795 Male, age 51, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 31.1
1831 Male, age 72, unknown 35.9
2464 Female, age 72, unknown 30.9
2850 Male, age 76, both hemispheres 30.0
1840 Male, age 53, unknown 27.5
Periaquaductal grey, lateral
nTPM: 26.6
2053 Male, age 18, unknown 28.6
2140 Male, age 76, both hemispheres 25.6
2272 Male, age 74, both hemispheres 25.5
Pretectal area
nTPM: 30.9
1815 Male, age 53, unknown 37.8
2316 Male, age 76, right hemisphere 35.1
2407 Male, age 75, both hemispheres 34.1
2007 Male, age 72, unknown 33.3
2825 Male, age 18, unknown 32.4
1817 Female, age 42, unknown 31.6
2224 Female, age 72, unknown 28.5
1944 Female, age 72, unknown 28.2
1816 Male, age 51, unknown 27.1
2667 Female, age 75, unknown 26.3
2273 Male, age 74, both hemispheres 25.1
Red nucleus
nTPM: 45.9
1821 Female, age 72, unknown 52.0
1865 Male, age 51, unknown 51.7
2503 Female, age 72, unknown 50.7
1904 Male, age 53, unknown 49.7
2823 Male, age 76, right hemisphere 48.4
1954 Female, age 42, unknown 46.9
2588 Male, age 74, left hemisphere 46.6
2227 Male, age 72, unknown 44.6
2785 Male, age 18, unknown 43.3
2769 Male, age 72, unknown 43.1
2725 Female, age 75, unknown 39.9
2584 Male, age 75, left hemisphere 34.0
Substantia nigra
nTPM: 37.1
1851 Male, age 51, unknown 41.3
2699 Male, age 18, unknown 40.7
2409 Female, age 72, unknown 39.1
2665 Male, age 74, both hemispheres 38.2
2590 Female, age 75, unknown 37.7
1889 Female, age 72, unknown 37.2
2241 Male, age 72, unknown 37.1
2583 Male, age 75, right hemisphere 34.4
1916 Female, age 42, unknown 32.8
1941 Male, age 53, unknown 32.7
Superior colliculus
nTPM: 35.6
1913 Female, age 42, unknown 45.0
1995 Male, age 72, unknown 42.1
2668 Female, age 75, unknown 41.5
2587 Male, age 74, left hemisphere 40.8
1839 Male, age 51, unknown 36.4
1895 Male, age 76, right hemisphere 35.8
2664 Male, age 75, both hemispheres 31.1
1796 Male, age 53, unknown 27.8
2087 Female, age 72, unknown 27.7
2261 Male, age 18, unknown 27.5
Ventral tegmental area
nTPM: 38.3
2223 Female, age 72, unknown 43.1
2410 Female, age 72, unknown 41.2
2021 Male, age 53, unknown 37.6
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 37.0
1942 Male, age 51, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.9
Samples: 183

Max nTPM: 120.0
Min nTPM: 15.3
Std nTPM: 16.4
Median nTPM: 41.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 120.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 92.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 90.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 78.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 75.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 75.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 72.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 72.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.9
FF:10158-103A5 76 years, female 56.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.2
Samples: 4

Max nTPM: 59.0
Min nTPM: 48.1
Sample A Female 59.0
Sample B Female 50.3
Sample C Male 51.2
Sample D Male 48.1
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 65.0
Min nTPM: 34.7
Sample A Female 65.0
Sample B Female 56.1
Sample C Male 36.4
Sample D Male 34.7
Periaqueductal gray
nTPM: 41.2
Samples: 3

Max nTPM: 43.7
Min nTPM: 39.5
Sample B Female 40.4
Sample C Male 39.5
Sample D Male 43.7
Superior colliculi
nTPM: 43.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 42.1
Sample A Female 44.4
Sample B Female 42.1
Sample C Male 42.6
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.8
Samples: 4

Max nTPM: 65.8
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 59.0
Sample C Female 65.8
Sample D Female 61.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69117026 Antisense, RP_050321_01_F02, Mouse strain C57BL/6J (56 days, male) 0.6

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