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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:292.9 nTPM
HPA Brain:58.3 nTPM
GTEx:292.9 nTPM
FANTOM5:167.9 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:238.6 nTPM
Allen mouse:15.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.3
Sample id Sample description nTPM
Amygdala
nTPM: 58.3
2814 Male, age 76, right hemisphere 82.4
2514 Male, age 75, right hemisphere 57.1
2695 Female, age 67, right hemisphere 56.5
1987 Female, age 91, left hemisphere 50.9
2517 Female, age 94, left hemisphere 44.5
Basal amygdala
nTPM: 51.9
2609 Male, age 75, right hemisphere 60.1
1955 Male, age 76, both hemispheres 57.2
2243 Female, age 91, right hemisphere 52.2
2110 Male, age 80, left hemisphere 49.7
2685 Female, age 94, left hemisphere 49.3
2827 Female, age 67, right hemisphere 43.2
Central amygdala
nTPM: 53.9
1905 Male, age 76, both hemispheres 63.1
2826 Female, age 94, left hemisphere 62.6
2701 Female, age 91, right hemisphere 51.8
2239 Male, age 80, left hemisphere 47.1
2515 Male, age 75, right hemisphere 45.0
Corticomedial amygdala
nTPM: 50.2
2240 Male, age 76, both hemispheres 57.4
2829 Male, age 80, left hemisphere 55.5
2429 Female, age 94, left hemisphere 50.8
2428 Male, age 75, right hemisphere 50.6
2242 Female, age 91, right hemisphere 50.1
2535 Female, age 67, right hemisphere 36.6
Lateral amygdala
nTPM: 46.1
1883 Male, age 76, both hemispheres 64.6
2534 Female, age 94, left hemisphere 49.5
2516 Male, age 75, right hemisphere 48.0
2255 Female, age 91, right hemisphere 39.2
2830 Female, age 67, right hemisphere 38.3
2256 Male, age 80, left hemisphere 36.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 292.9
Samples: 181

Max nTPM: 1003.6
Min nTPM: 154.2
Std nTPM: 98.8
Median nTPM: 274.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1003.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 681.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 589.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 557.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 532.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 499.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 484.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 480.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 474.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 450.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 443.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 438.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 428.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 428.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 424.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 423.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 416.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 407.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 403.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 392.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 391.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 386.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 380.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 377.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 370.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 369.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 369.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 369.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 359.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 356.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 355.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 354.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 353.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 351.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 351.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 342.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 339.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 337.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 337.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 337.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 335.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 332.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 328.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 326.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 324.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 323.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 321.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 320.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 317.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 316.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 316.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 313.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 311.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 309.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 308.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 306.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 306.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 305.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 304.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 302.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 302.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 300.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 300.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 299.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 299.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 297.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 295.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 295.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 293.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 293.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 292.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 291.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 289.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 288.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 288.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 285.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 284.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 284.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 283.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 281.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 281.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 281.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 281.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 281.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 280.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 280.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 278.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 278.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 277.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 274.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 274.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 273.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 273.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 273.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 271.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 269.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 269.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 268.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 267.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 266.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 266.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 265.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 263.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 262.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 262.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 260.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 260.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 259.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 258.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 258.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 256.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 255.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 254.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 253.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 252.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 252.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 252.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 252.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 250.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 250.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 250.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 248.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 246.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 245.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 244.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 242.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 241.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 241.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 241.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 238.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 237.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 236.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 235.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 233.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 233.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 232.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 232.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 232.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 230.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 228.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 227.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 226.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 225.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 224.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 223.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 223.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 219.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 219.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 218.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 218.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 217.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 215.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 215.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 213.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 213.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 212.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 212.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 208.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 206.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 206.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 206.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 204.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 200.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 198.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 196.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 196.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 182.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 180.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 177.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 176.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 175.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 175.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 173.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 173.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 168.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 167.9
FF:10151-102I7 76 years, female 167.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.1
Pig sample Sample description nTPM
Amygdala
nTPM: 70.1
Samples: 4

Max nTPM: 103.5
Min nTPM: 55.1
Sample A Female 103.5
Sample B Female 63.0
Sample C Male 58.7
Sample D Male 55.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 238.6
Samples: 4

Max nTPM: 250.0
Min nTPM: 230.1
Sample A Male 250.0
Sample B Male 236.0
Sample C Female 238.3
Sample D Female 230.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.1
393259 Antisense, RP_040809_01_B01, Mouse strain C57BL/6J (56 days, male) 15.1

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