HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:119.4 nTPM
GTEx:35.7 nTPM
FANTOM5:145.8 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:102.0 nTPM
Allen mouse:10.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021463Antibody HPA028703
Glial cells LowNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 119.4
Sample id Sample description nTPM
Hippocampus
nTPM: 107.4
1911 Female, age 85, right hemisphere 121.5
2148 Female, age 91, left hemisphere 109.1
2621 Female, age 67, right hemisphere 108.4
1855 Male, age 76, left hemisphere 106.9
1898 Male, age 80, left hemisphere 100.3
2529 Female, age 94, left hemisphere 98.1
Dentate gyrus
nTPM: 108.3
1927 Female, age 91, both hemispheres 126.4
2010 Male, age 76, both hemispheres 124.5
2246 Female, age 85, both hemispheres 112.2
2531 Female, age 67, both hemispheres 99.4
2530 Female, age 94, left hemisphere 98.1
2528 Male, age 74, both hemispheres 89.2
Entorhinal gyrus
nTPM: 91.3
2686 Male, age 75, right hemisphere 108.8
1938 Female, age 85, left hemisphere 103.0
1787 Male, age 76, left hemisphere 98.2
2764 Male, age 80, right hemisphere 83.5
2117 Female, age 91, right hemisphere 83.3
2613 Female, age 94, left hemisphere 71.0
Hippocampus, CA1
nTPM: 119.0
2749 Male, age 80, left hemisphere 171.2
1873 Female, age 85, both hemispheres 130.2
2045 Male, age 76, both hemispheres 112.3
2527 Male, age 74, both hemispheres 94.0
2082 Female, age 91, right hemisphere 87.4
Hippocampus, CA2
nTPM: 103.8
1963 Male, age 80, left hemisphere 138.4
1892 Male, age 76, both hemispheres 122.1
2113 Female, age 91, right hemisphere 100.9
2437 Female, age 94, left hemisphere 89.2
1940 Female, age 85, left hemisphere 89.0
2249 Male, age 74, both hemispheres 82.9
Hippocampus, CA3
nTPM: 119.4
2137 Male, age 80, left hemisphere 174.2
1867 Male, age 76, both hemispheres 123.3
1891 Female, age 85, both hemispheres 113.5
2861 Female, age 67, both hemispheres 113.1
2620 Female, age 94, left hemisphere 105.8
2436 Male, age 74, both hemispheres 86.4
Parahippocampal cortex
nTPM: 98.7
2018 Male, age 76, both hemispheres 122.7
2692 Male, age 74, both hemispheres 108.8
1933 Female, age 85, both hemispheres 108.0
2622 Female, age 67, right hemisphere 105.1
2693 Female, age 94, both hemispheres 95.0
2245 Female, age 91, both hemispheres 92.6
1990 Female, age 91, right hemisphere 91.5
2250 Female, age 67, right hemisphere 90.5
2532 Female, age 72, left hemisphere 87.6
1850 Male, age 80, both hemispheres 85.0
Perirhinal gyrus
nTPM: 90.9
1841 Female, age 85, right hemisphere 103.0
1794 Male, age 80, right hemisphere 92.2
1847 Female, age 91, left hemisphere 91.9
2521 Female, age 94, right hemisphere 89.3
2848 Male, age 76, right hemisphere 78.0
Subiculum
nTPM: 102.7
2042 Male, age 76, both hemispheres 115.6
2619 Male, age 74, both hemispheres 106.9
1901 Male, age 80, both hemispheres 106.0
2438 Female, age 94, left hemisphere 103.9
2729 Female, age 91, right hemisphere 94.7
1977 Female, age 85, both hemispheres 89.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 35.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.7
Samples: 255

Max nTPM: 78.4
Min nTPM: 16.3
Std nTPM: 9.8
Median nTPM: 34.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 78.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 70.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 63.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 63.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 62.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 61.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 60.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 60.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 59.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 59.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 58.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 145.8
FF:10169-103B7 60 years, female 150.5
FF:10153-102I9 76 years, female 141.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 58.5
Pig sample Sample description nTPM
Subiculum
nTPM: 31.1
Samples: 4

Max nTPM: 42.0
Min nTPM: 25.3
Sample A Female 42.0
Sample B Female 28.0
Sample C Male 25.3
Sample D Male 29.0
Dorsal hippocampus
nTPM: 58.5
Samples: 4

Max nTPM: 80.6
Min nTPM: 44.9
Sample A Female 80.6
Sample B Female 57.3
Sample C Male 44.9
Sample D Male 51.1
Entorhinal cortex
nTPM: 37.5
Samples: 4

Max nTPM: 42.5
Min nTPM: 33.1
Sample A Female 42.5
Sample B Female 38.0
Sample C Male 36.3
Sample D Male 33.1
Ventral hippocampus
nTPM: 42.8
Samples: 4

Max nTPM: 71.6
Min nTPM: 25.3
Sample A Female 34.1
Sample B Female 25.3
Sample C Male 40.0
Sample D Male 71.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 102.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.8
Samples: 4

Max nTPM: 92.9
Min nTPM: 82.2
Sample A Male 92.9
Sample B Male 87.8
Sample C Female 82.2
Sample D Female 84.4
Hippocampal formation
nTPM: 102.0
Samples: 4

Max nTPM: 116.4
Min nTPM: 93.9
Sample A Male 94.0
Sample B Male 103.7
Sample C Female 116.4
Sample D Female 93.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.3
70429423 Antisense, RP_050614_01_F05, Mouse strain C57BL/6J (56 days, male) 12.3
74988453 Antisense, RP_060315_05_D08, Mouse strain C57BL/6J (56 days, male) 8.4

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