MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA Brain:148.6 nTPM
GTEx:44.3 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:51.6 nTPM
Mouse:29.0 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.2
2019 Male, age 18, unknown 154.2
2666 Male, age 74, left hemisphere 140.5
2586 Male, age 75, left hemisphere 138.2
1830 Male, age 51, unknown 119.1
2828 Female, age 72, unknown 117.7
1833 Male, age 53, unknown 114.1
2411 Female, age 72, unknown 111.0
1870 Female, age 42, unknown 106.0
1827 Male, age 72, unknown 94.5
2219 Male, age 76, both hemispheres 87.0
Dorsal raphe nucleus
nTPM: 110.9
1828 Male, age 53, unknown 130.2
2047 Male, age 72, unknown 123.8
2016 Female, age 72, unknown 110.3
2750 Male, age 76, both hemispheres 99.5
2298 Female, age 72, unknown 90.7
Inferior colliculus
nTPM: 139.2
1890 Male, age 53, unknown 185.9
1848 Female, age 42, unknown 137.1
2097 Female, age 72, unknown 126.5
2849 Male, age 72, unknown 107.3
Median raphe nucleus
nTPM: 90.9
2220 Male, age 76, midline 90.9
Periaquaductal grey, anterior
nTPM: 92.8
2502 Female, age 75, unknown 100.5
1795 Male, age 51, unknown 89.0
1947 Male, age 18, unknown 88.8
Periaquaductal grey, dorsal
nTPM: 102.4
2464 Female, age 72, unknown 111.0
1831 Male, age 72, unknown 108.6
2850 Male, age 76, both hemispheres 101.0
1840 Male, age 53, unknown 89.1
Periaquaductal grey, lateral
nTPM: 97.9
2140 Male, age 76, both hemispheres 108.5
2053 Male, age 18, unknown 100.1
2272 Male, age 74, both hemispheres 85.0
Pretectal area
nTPM: 108.1
1817 Female, age 42, unknown 159.3
2007 Male, age 72, unknown 127.8
2316 Male, age 76, right hemisphere 113.1
1815 Male, age 53, unknown 111.9
1944 Female, age 72, unknown 111.7
1816 Male, age 51, unknown 107.9
2667 Female, age 75, unknown 107.3
2224 Female, age 72, unknown 92.0
2825 Male, age 18, unknown 90.9
2407 Male, age 75, both hemispheres 88.4
2273 Male, age 74, both hemispheres 79.0
Red nucleus
nTPM: 148.6
1821 Female, age 72, unknown 180.0
2588 Male, age 74, left hemisphere 178.3
1954 Female, age 42, unknown 171.3
1865 Male, age 51, unknown 168.2
2769 Male, age 72, unknown 157.6
1904 Male, age 53, unknown 154.6
2227 Male, age 72, unknown 148.6
2823 Male, age 76, right hemisphere 138.4
2785 Male, age 18, unknown 136.5
2503 Female, age 72, unknown 132.4
2584 Male, age 75, left hemisphere 110.7
2725 Female, age 75, unknown 106.0
Substantia nigra
nTPM: 135.6
2665 Male, age 74, both hemispheres 194.7
2699 Male, age 18, unknown 141.8
1851 Male, age 51, unknown 138.0
2590 Female, age 75, unknown 135.3
1916 Female, age 42, unknown 134.7
2583 Male, age 75, right hemisphere 133.0
1889 Female, age 72, unknown 127.7
2241 Male, age 72, unknown 125.0
2409 Female, age 72, unknown 120.9
1941 Male, age 53, unknown 105.0
Superior colliculus
nTPM: 109.9
2668 Female, age 75, unknown 136.9
1995 Male, age 72, unknown 117.1
2664 Male, age 75, both hemispheres 115.8
2087 Female, age 72, unknown 113.7
1913 Female, age 42, unknown 107.1
2587 Male, age 74, left hemisphere 105.8
1839 Male, age 51, unknown 103.8
1895 Male, age 76, right hemisphere 102.7
2261 Male, age 18, unknown 99.5
1796 Male, age 53, unknown 97.0
Ventral tegmental area
nTPM: 109.6
2410 Female, age 72, unknown 122.7
2218 Male, age 76, both hemispheres 115.9
2223 Female, age 72, unknown 113.1
1915 Female, age 42, unknown 105.8
2021 Male, age 53, unknown 102.6
1942 Male, age 51, unknown 97.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 183

Max nTPM: 128.5
Min nTPM: 10.2
Std nTPM: 20.6
Median nTPM: 39.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 128.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 118.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 117.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 116.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 106.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 106.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 98.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 96.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 86.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 86.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.4
Samples: 4

Max nTPM: 55.7
Min nTPM: 33.6
Sample A Female 46.4
Sample B Female 33.6
Sample C Male 33.9
Sample D Male 55.7
Midbrain
nTPM: 51.6
Samples: 4

Max nTPM: 109.4
Min nTPM: 30.1
Sample A Female 109.4
Sample B Female 30.1
Sample C Male 34.2
Sample D Male 32.8
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 30.7
Min nTPM: 29.2
Sample B Female 29.2
Sample C Male 30.5
Sample D Male 30.7
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 31.7
Sample A Female 48.4
Sample B Female 31.7
Sample C Male 36.9
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 29.8
Min nTPM: 27.8
Sample A Male 29.3
Sample B Male 29.1
Sample C Female 29.8
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70429423 Antisense, RP_050614_01_F05, Mouse strain C57BL/6J (56 days, male) 2.3
74988453 Antisense, RP_060315_05_D08, Mouse strain C57BL/6J (56 days, male) 1.2

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