BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:34.3 nTPM
GTEx:29.7 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Mouse:50.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2666 Male, age 74, left hemisphere 42.8
1827 Male, age 72, unknown 37.7
2219 Male, age 76, both hemispheres 29.9
2828 Female, age 72, unknown 26.2
2019 Male, age 18, unknown 17.5
2586 Male, age 75, left hemisphere 17.4
1870 Female, age 42, unknown 17.2
1833 Male, age 53, unknown 16.5
2411 Female, age 72, unknown 15.8
1830 Male, age 51, unknown 13.4
Dorsal raphe nucleus
nTPM: 23.2
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 34.1
2047 Male, age 72, unknown 17.2
2016 Female, age 72, unknown 13.6
1828 Male, age 53, unknown 12.7
Inferior colliculus
nTPM: 21.9
2097 Female, age 72, unknown 26.6
1890 Male, age 53, unknown 21.3
2849 Male, age 72, unknown 20.8
1848 Female, age 42, unknown 19.0
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 30.2
1795 Male, age 51, unknown 40.5
1947 Male, age 18, unknown 27.9
2502 Female, age 75, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 25.1
1840 Male, age 53, unknown 30.5
1831 Male, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 23.0
2464 Female, age 72, unknown 18.5
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 25.6
2140 Male, age 76, both hemispheres 20.5
2272 Male, age 74, both hemispheres 19.2
Pretectal area
nTPM: 33.3
1816 Male, age 51, unknown 56.3
1944 Female, age 72, unknown 52.3
1815 Male, age 53, unknown 50.4
2007 Male, age 72, unknown 39.6
1817 Female, age 42, unknown 31.2
2667 Female, age 75, unknown 30.8
2224 Female, age 72, unknown 30.3
2825 Male, age 18, unknown 20.4
2407 Male, age 75, both hemispheres 20.2
2273 Male, age 74, both hemispheres 19.6
2316 Male, age 76, right hemisphere 15.6
Red nucleus
nTPM: 11.6
2584 Male, age 75, left hemisphere 20.7
2725 Female, age 75, unknown 19.6
2785 Male, age 18, unknown 17.4
2588 Male, age 74, left hemisphere 14.5
2503 Female, age 72, unknown 13.3
2823 Male, age 76, right hemisphere 10.0
1904 Male, age 53, unknown 9.6
1821 Female, age 72, unknown 8.2
2769 Male, age 72, unknown 7.0
1954 Female, age 42, unknown 6.4
2227 Male, age 72, unknown 6.3
1865 Male, age 51, unknown 6.0
Substantia nigra
nTPM: 34.3
1916 Female, age 42, unknown 61.2
2241 Male, age 72, unknown 50.9
1851 Male, age 51, unknown 45.2
1889 Female, age 72, unknown 37.2
2409 Female, age 72, unknown 35.3
2699 Male, age 18, unknown 24.1
1941 Male, age 53, unknown 23.6
2665 Male, age 74, both hemispheres 23.3
2590 Female, age 75, unknown 21.3
2583 Male, age 75, right hemisphere 20.8
Superior colliculus
nTPM: 25.8
1796 Male, age 53, unknown 43.1
2087 Female, age 72, unknown 40.3
2261 Male, age 18, unknown 32.9
2668 Female, age 75, unknown 26.6
2664 Male, age 75, both hemispheres 21.9
1913 Female, age 42, unknown 20.8
1839 Male, age 51, unknown 20.3
1895 Male, age 76, right hemisphere 18.8
1995 Male, age 72, unknown 17.6
2587 Male, age 74, left hemisphere 15.9
Ventral tegmental area
nTPM: 30.6
2218 Male, age 76, both hemispheres 44.9
1915 Female, age 42, unknown 33.9
2410 Female, age 72, unknown 30.7
2021 Male, age 53, unknown 26.7
1942 Male, age 51, unknown 26.6
2223 Female, age 72, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.7
Samples: 183

Max nTPM: 170.5
Min nTPM: 0.2
Std nTPM: 32.9
Median nTPM: 14.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 170.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 151.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 129.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 129.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 119.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 105.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 105.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 103.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 96.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 89.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 87.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 53.0
Min nTPM: 46.8
Sample A 49.7
Sample B 46.8
Sample C 53.0
Sample D 51.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo