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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1217.1 nTPM
GTEx:1217.1 nTPM
FANTOM5:506.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047153
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1217.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1217.1
Samples: 170

Max nTPM: 4097.6
Min nTPM: 541.4
Std nTPM: 459.4
Median nTPM: 1133.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4097.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3433.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2487.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2419.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2356.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2336.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2080.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2043.1
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1961.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1927.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1875.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1858.3
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1818.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1702.8
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1686.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1677.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1671.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1657.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1631.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1625.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1596.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1592.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1575.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1567.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1566.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1550.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1541.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1540.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1528.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1518.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1508.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1507.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1504.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1499.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1491.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1478.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1468.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1457.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1428.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1419.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1417.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1411.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1394.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1379.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1364.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1363.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1343.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1339.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1333.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1312.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1312.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1308.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1304.7
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1301.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1286.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1283.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1283.2
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1278.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1258.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1246.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1245.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1240.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1239.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1235.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1235.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1234.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1232.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1227.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1213.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1213.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1212.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1211.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1195.6
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1193.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1183.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1181.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1175.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1171.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1165.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1151.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1151.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1147.0
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1143.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1134.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1133.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1132.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1131.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1120.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1119.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1117.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1114.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1113.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1109.8
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1109.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1103.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1102.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1102.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1099.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1091.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1091.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1089.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1079.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1069.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1066.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1061.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1059.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1056.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1048.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1045.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1039.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1036.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1030.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1028.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1020.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1013.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1009.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1007.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 999.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 993.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 974.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 972.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 962.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 957.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 946.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 943.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 933.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 924.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 917.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 911.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 909.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 906.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 903.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 900.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 900.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 891.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 885.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 882.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 881.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 878.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 853.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 853.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 851.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 848.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 847.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 829.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 821.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 813.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 809.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 805.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 791.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 790.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 787.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 781.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 780.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 777.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 731.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 723.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 722.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 709.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 702.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 688.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 687.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 679.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 676.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 675.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 645.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 636.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 591.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 570.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 541.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 506.7
FF:10204-103F6 68 years, female 506.7

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