MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.7 nTPM
HPA Brain:32.5 nTPM
GTEx:85.7 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:80.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
1870 Female, age 42, unknown 22.5
2219 Male, age 76, both hemispheres 22.4
2586 Male, age 75, left hemisphere 20.5
2828 Female, age 72, unknown 20.4
2411 Female, age 72, unknown 19.2
1827 Male, age 72, unknown 18.8
1830 Male, age 51, unknown 18.2
1833 Male, age 53, unknown 17.5
2019 Male, age 18, unknown 17.4
2666 Male, age 74, left hemisphere 17.2
Dorsal raphe nucleus
nTPM: 24.6
2298 Female, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 28.1
2047 Male, age 72, unknown 27.1
1828 Male, age 53, unknown 21.5
2016 Female, age 72, unknown 16.2
Inferior colliculus
nTPM: 18.9
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 19.4
2849 Male, age 72, unknown 19.0
1848 Female, age 42, unknown 16.3
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 22.5
1947 Male, age 18, unknown 23.7
2502 Female, age 75, unknown 22.1
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 17.7
2850 Male, age 76, both hemispheres 22.7
1840 Male, age 53, unknown 19.2
1831 Male, age 72, unknown 17.0
2464 Female, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 19.8
2140 Male, age 76, both hemispheres 21.2
2272 Male, age 74, both hemispheres 21.0
2053 Male, age 18, unknown 17.4
Pretectal area
nTPM: 21.4
2224 Female, age 72, unknown 26.6
1817 Female, age 42, unknown 26.3
2273 Male, age 74, both hemispheres 24.2
2667 Female, age 75, unknown 24.0
1816 Male, age 51, unknown 23.9
2007 Male, age 72, unknown 23.2
1944 Female, age 72, unknown 22.8
2825 Male, age 18, unknown 19.6
1815 Male, age 53, unknown 18.4
2316 Male, age 76, right hemisphere 13.1
2407 Male, age 75, both hemispheres 13.1
Red nucleus
nTPM: 22.0
1821 Female, age 72, unknown 29.1
1865 Male, age 51, unknown 26.6
2503 Female, age 72, unknown 25.6
2785 Male, age 18, unknown 25.0
1954 Female, age 42, unknown 24.3
1904 Male, age 53, unknown 23.7
2227 Male, age 72, unknown 22.3
2769 Male, age 72, unknown 21.2
2823 Male, age 76, right hemisphere 20.6
2725 Female, age 75, unknown 20.2
2584 Male, age 75, left hemisphere 15.9
2588 Male, age 74, left hemisphere 9.2
Substantia nigra
nTPM: 23.3
1916 Female, age 42, unknown 39.0
1851 Male, age 51, unknown 24.9
2699 Male, age 18, unknown 24.7
1941 Male, age 53, unknown 23.3
2665 Male, age 74, both hemispheres 23.3
1889 Female, age 72, unknown 22.9
2409 Female, age 72, unknown 22.2
2590 Female, age 75, unknown 19.3
2241 Male, age 72, unknown 18.9
2583 Male, age 75, right hemisphere 14.8
Superior colliculus
nTPM: 17.8
2587 Male, age 74, left hemisphere 23.5
1796 Male, age 53, unknown 23.1
1913 Female, age 42, unknown 19.4
2668 Female, age 75, unknown 19.0
2087 Female, age 72, unknown 18.4
2261 Male, age 18, unknown 17.2
1895 Male, age 76, right hemisphere 16.6
1995 Male, age 72, unknown 16.4
1839 Male, age 51, unknown 14.3
2664 Male, age 75, both hemispheres 10.3
Ventral tegmental area
nTPM: 25.2
2218 Male, age 76, both hemispheres 32.1
1915 Female, age 42, unknown 29.3
2223 Female, age 72, unknown 26.2
2410 Female, age 72, unknown 22.7
1942 Male, age 51, unknown 21.1
2021 Male, age 53, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.7
Samples: 183

Max nTPM: 153.1
Min nTPM: 34.0
Std nTPM: 20.7
Median nTPM: 83.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 153.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 139.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 138.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 135.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 131.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 130.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 130.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 125.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 123.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 122.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.2
Samples: 4

Max nTPM: 21.2
Min nTPM: 9.8
Sample A Female 21.2
Sample B Female 12.4
Sample C Male 17.2
Sample D Male 9.8
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 19.8
Min nTPM: 11.5
Sample A Female 19.8
Sample B Female 15.8
Sample C Male 13.9
Sample D Male 11.5
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 15.9
Min nTPM: 10.0
Sample B Female 13.3
Sample C Male 15.9
Sample D Male 10.0
Superior colliculi
nTPM: 15.0
Samples: 4

Max nTPM: 21.5
Min nTPM: 10.1
Sample A Female 21.5
Sample B Female 10.1
Sample C Male 15.2
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.3
Samples: 4

Max nTPM: 102.3
Min nTPM: 59.4
Sample A Male 102.3
Sample B Male 72.4
Sample C Female 59.4
Sample D Female 87.2

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