MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA Brain:13.2 nTPM
GTEx:22.1 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:41.2 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2219 Male, age 76, both hemispheres 12.3
1827 Male, age 72, unknown 11.7
2019 Male, age 18, unknown 11.6
1870 Female, age 42, unknown 11.3
1830 Male, age 51, unknown 11.1
2666 Male, age 74, left hemisphere 11.1
1833 Male, age 53, unknown 10.9
2411 Female, age 72, unknown 10.9
2828 Female, age 72, unknown 10.2
2586 Male, age 75, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 10.5
1828 Male, age 53, unknown 12.4
2750 Male, age 76, both hemispheres 10.5
2016 Female, age 72, unknown 10.3
2047 Male, age 72, unknown 10.2
2298 Female, age 72, unknown 9.1
Inferior colliculus
nTPM: 12.3
2849 Male, age 72, unknown 13.4
1890 Male, age 53, unknown 12.5
1848 Female, age 42, unknown 12.3
2097 Female, age 72, unknown 11.3
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Periaquaductal grey, anterior
nTPM: 11.3
2502 Female, age 75, unknown 12.6
1947 Male, age 18, unknown 11.0
1795 Male, age 51, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 11.3
2464 Female, age 72, unknown 12.1
1840 Male, age 53, unknown 11.1
1831 Male, age 72, unknown 11.0
2850 Male, age 76, both hemispheres 11.0
Periaquaductal grey, lateral
nTPM: 9.9
2053 Male, age 18, unknown 10.9
2272 Male, age 74, both hemispheres 9.7
2140 Male, age 76, both hemispheres 9.2
Pretectal area
nTPM: 12.0
1817 Female, age 42, unknown 14.5
1816 Male, age 51, unknown 14.3
1944 Female, age 72, unknown 13.6
2007 Male, age 72, unknown 12.8
1815 Male, age 53, unknown 12.6
2825 Male, age 18, unknown 11.7
2224 Female, age 72, unknown 10.9
2273 Male, age 74, both hemispheres 10.5
2407 Male, age 75, both hemispheres 10.5
2667 Female, age 75, unknown 10.4
2316 Male, age 76, right hemisphere 10.2
Red nucleus
nTPM: 11.7
2725 Female, age 75, unknown 13.9
2588 Male, age 74, left hemisphere 13.2
2503 Female, age 72, unknown 13.0
2823 Male, age 76, right hemisphere 12.5
1821 Female, age 72, unknown 12.0
1954 Female, age 42, unknown 11.8
1865 Male, age 51, unknown 11.4
1904 Male, age 53, unknown 11.1
2769 Male, age 72, unknown 11.0
2785 Male, age 18, unknown 10.5
2584 Male, age 75, left hemisphere 10.1
2227 Male, age 72, unknown 9.7
Substantia nigra
nTPM: 13.2
2409 Female, age 72, unknown 19.1
2241 Male, age 72, unknown 15.9
1889 Female, age 72, unknown 13.2
1916 Female, age 42, unknown 13.0
2699 Male, age 18, unknown 12.5
1851 Male, age 51, unknown 12.4
2590 Female, age 75, unknown 12.3
1941 Male, age 53, unknown 11.8
2665 Male, age 74, both hemispheres 11.3
2583 Male, age 75, right hemisphere 10.3
Superior colliculus
nTPM: 11.7
1895 Male, age 76, right hemisphere 14.0
2587 Male, age 74, left hemisphere 12.3
1839 Male, age 51, unknown 12.2
2087 Female, age 72, unknown 12.1
2261 Male, age 18, unknown 11.9
1796 Male, age 53, unknown 11.5
2664 Male, age 75, both hemispheres 11.1
1913 Female, age 42, unknown 10.9
2668 Female, age 75, unknown 10.5
1995 Male, age 72, unknown 10.1
Ventral tegmental area
nTPM: 11.1
2410 Female, age 72, unknown 12.8
2218 Male, age 76, both hemispheres 11.5
1915 Female, age 42, unknown 10.9
2021 Male, age 53, unknown 10.6
2223 Female, age 72, unknown 10.6
1942 Male, age 51, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.1
Samples: 139

Max nTPM: 48.1
Min nTPM: 9.8
Std nTPM: 5.8
Median nTPM: 21.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 48.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 41.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 38.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 35.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 34.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 32.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 32.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 31.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 31.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 31.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 11.4
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 9.0
Sample C Male 9.1
Sample D Male 11.4
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 9.9
Sample C Male 9.0
Sample D Male 11.7
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 11.1
Min nTPM: 8.9
Sample B Female 10.9
Sample C Male 8.9
Sample D Male 11.1
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 7.7
Sample C Male 10.1
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 43.3
Min nTPM: 39.3
Sample A Male 41.7
Sample B Male 40.7
Sample C Female 39.3
Sample D Female 43.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68341489 Antisense, RP_041207_01_F06, Mouse strain C57BL/6J (56 days, male) 2.5

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