BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.3 nTPM
HPA Brain:358.5 nTPM
GTEx:119.3 nTPM
FANTOM5:180.9 Scaled Tags Per Million
Mouse:116.1 nTPM
Rat:156.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 358.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 254.7
2586 Male, age 75, left hemisphere 335.7
2828 Female, age 72, unknown 292.7
2666 Male, age 74, left hemisphere 276.2
2411 Female, age 72, unknown 257.2
1870 Female, age 42, unknown 247.8
1830 Male, age 51, unknown 242.4
1833 Male, age 53, unknown 241.2
1827 Male, age 72, unknown 230.5
2219 Male, age 76, both hemispheres 229.4
2019 Male, age 18, unknown 193.5
Dorsal raphe nucleus
nTPM: 260.1
2750 Male, age 76, both hemispheres 318.1
2298 Female, age 72, unknown 261.7
2016 Female, age 72, unknown 255.3
2047 Male, age 72, unknown 245.0
1828 Male, age 53, unknown 220.1
Inferior colliculus
nTPM: 241.9
2849 Male, age 72, unknown 269.9
2097 Female, age 72, unknown 253.6
1848 Female, age 42, unknown 243.9
1890 Male, age 53, unknown 200.1
Median raphe nucleus
nTPM: 247.0
2220 Male, age 76, midline 247.0
Periaquaductal grey, anterior
nTPM: 358.5
2502 Female, age 75, unknown 402.9
1795 Male, age 51, unknown 376.4
1947 Male, age 18, unknown 296.2
Periaquaductal grey, dorsal
nTPM: 236.4
2850 Male, age 76, both hemispheres 268.8
2464 Female, age 72, unknown 237.9
1840 Male, age 53, unknown 231.3
1831 Male, age 72, unknown 207.6
Periaquaductal grey, lateral
nTPM: 281.6
2140 Male, age 76, both hemispheres 310.0
2272 Male, age 74, both hemispheres 272.6
2053 Male, age 18, unknown 262.3
Pretectal area
nTPM: 260.5
2316 Male, age 76, right hemisphere 314.0
2224 Female, age 72, unknown 292.0
2825 Male, age 18, unknown 280.3
2007 Male, age 72, unknown 260.9
2407 Male, age 75, both hemispheres 259.5
2667 Female, age 75, unknown 258.6
2273 Male, age 74, both hemispheres 257.1
1816 Male, age 51, unknown 247.7
1815 Male, age 53, unknown 242.4
1817 Female, age 42, unknown 233.1
1944 Female, age 72, unknown 219.8
Red nucleus
nTPM: 232.1
2785 Male, age 18, unknown 287.1
2584 Male, age 75, left hemisphere 270.3
2227 Male, age 72, unknown 270.0
2769 Male, age 72, unknown 264.3
2503 Female, age 72, unknown 237.7
1904 Male, age 53, unknown 233.7
2588 Male, age 74, left hemisphere 228.3
2823 Male, age 76, right hemisphere 214.3
1865 Male, age 51, unknown 208.9
2725 Female, age 75, unknown 204.5
1954 Female, age 42, unknown 202.8
1821 Female, age 72, unknown 163.4
Substantia nigra
nTPM: 170.6
2583 Male, age 75, right hemisphere 231.0
1889 Female, age 72, unknown 203.2
1941 Male, age 53, unknown 187.3
1851 Male, age 51, unknown 171.3
2699 Male, age 18, unknown 169.1
2590 Female, age 75, unknown 167.6
2665 Male, age 74, both hemispheres 166.9
1916 Female, age 42, unknown 166.2
2241 Male, age 72, unknown 145.1
2409 Female, age 72, unknown 98.6
Superior colliculus
nTPM: 269.3
2664 Male, age 75, both hemispheres 338.2
1796 Male, age 53, unknown 330.7
2261 Male, age 18, unknown 324.8
1839 Male, age 51, unknown 267.0
2668 Female, age 75, unknown 262.6
1995 Male, age 72, unknown 260.9
1913 Female, age 42, unknown 260.7
2087 Female, age 72, unknown 227.9
2587 Male, age 74, left hemisphere 218.1
1895 Male, age 76, right hemisphere 202.2
Ventral tegmental area
nTPM: 231.9
2223 Female, age 72, unknown 262.8
2021 Male, age 53, unknown 259.6
1942 Male, age 51, unknown 252.1
2218 Male, age 76, both hemispheres 223.1
1915 Female, age 42, unknown 203.5
2410 Female, age 72, unknown 190.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 119.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.3
Samples: 183

Max nTPM: 478.5
Min nTPM: 39.6
Std nTPM: 54.7
Median nTPM: 108.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 478.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 329.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 301.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 238.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 235.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 231.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 230.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 211.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 210.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 207.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 204.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.9
FF:10158-103A5 76 years, female 180.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 116.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.1
Samples: 4

Max nTPM: 138.8
Min nTPM: 105.0
Sample A 115.4
Sample B 138.8
Sample C 105.0
Sample D 105.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 156.2
Rat sample Sample description nTPM
Midbrain
nTPM: 156.2
Samples: 4

Max nTPM: 165.6
Min nTPM: 146.4
Sample A 165.3
Sample A 165.6
Sample A 147.5
Sample A 146.4

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