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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:79.0 nTPM
HPA Brain:112.0 nTPM
GTEx:79.0 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:60.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 103.8
2565 Male, age 75, midline 121.1
1981 Female, age 72, midline 112.1
2194 Female, age 79, both hemispheres 97.7
2816 Male, age 47, midline 97.2
2048 Male, age 55, midline 91.0
Cervical spinal cord, dorsal horn
nTPM: 103.2
2296 Male, age 66, both hemispheres 130.3
2069 Male, age 47, both hemispheres 116.0
2173 Female, age 72, unknown 115.5
1877 Male, age 55, unknown 101.3
2297 Male, age 75, both hemispheres 87.3
2721 Male, age 90, both hemispheres 68.5
Cervical spinal cord, ventral horn
nTPM: 112.0
2809 Male, age 90, both hemispheres 133.5
2098 Female, age 72, unknown 132.5
2480 Male, age 75, both hemispheres 115.2
2295 Male, age 66, both hemispheres 103.6
2068 Male, age 55, unknown 97.3
2820 Female, age 79, both hemispheres 89.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.0
Samples: 204

Max nTPM: 118.0
Min nTPM: 54.7
Std nTPM: 11.8
Median nTPM: 78.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 118.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 116.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 112.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 112.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 108.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 105.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 102.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 101.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 101.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 99.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 99.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 99.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 98.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 96.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 96.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 96.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 95.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 94.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 93.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 92.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 92.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 91.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 91.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 91.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 90.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 90.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 90.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 89.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 89.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 89.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 89.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 89.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 89.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 89.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 88.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 88.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 88.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 88.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 88.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 88.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 88.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 88.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 86.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 86.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 86.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 86.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 86.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 86.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 86.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 86.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 85.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 85.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 85.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 85.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 85.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 84.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 84.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 84.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 83.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 83.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 83.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 83.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 83.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 83.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 82.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 82.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 82.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 82.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 82.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 82.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 82.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 81.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 81.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 81.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 81.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 81.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 81.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 81.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 81.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 80.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 80.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 80.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 80.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 79.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 79.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 79.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 79.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 79.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 78.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 78.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 78.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 78.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 78.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 77.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 77.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 77.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 77.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 77.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 77.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 76.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 76.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 76.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 76.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 76.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 75.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 75.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 75.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 75.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 74.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 73.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 73.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 73.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 73.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 73.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 73.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 73.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 72.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 72.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 72.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 72.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 72.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 72.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 71.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 71.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 71.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 71.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 71.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 70.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 70.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 70.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 70.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 70.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 70.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 70.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 70.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 69.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 69.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 69.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 69.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 68.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 68.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 68.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 68.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 68.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 67.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 67.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 67.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 67.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 66.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 66.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 66.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 66.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 66.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 66.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 66.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 66.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 65.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 65.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 65.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 64.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 64.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 63.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 63.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 63.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 63.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 63.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 63.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 62.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 61.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 61.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 59.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 59.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 58.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 57.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 55.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 54.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.0
FF:10159-103A6 76 years, female 49.3
FF:10181-103D1 60 years, female 30.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.1
Samples: 4

Max nTPM: 68.1
Min nTPM: 55.3
Sample A Female 58.0
Sample B Female 55.3
Sample C Male 68.1
Sample D Male 58.9
Ventral spinal cord
nTPM: 60.5
Samples: 4

Max nTPM: 62.4
Min nTPM: 59.2
Sample A Female 59.2
Sample B Female 59.8
Sample C Male 62.4
Sample D Male 60.4

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