MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.5 nTPM
HPA Brain:103.9 nTPM
GTEx:70.5 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:49.5 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.6
2411 Female, age 72, unknown 118.3
2586 Male, age 75, left hemisphere 112.3
1870 Female, age 42, unknown 112.1
2019 Male, age 18, unknown 109.4
1827 Male, age 72, unknown 104.2
1833 Male, age 53, unknown 100.0
2828 Female, age 72, unknown 97.0
1830 Male, age 51, unknown 94.7
2219 Male, age 76, both hemispheres 90.0
2666 Male, age 74, left hemisphere 88.3
Dorsal raphe nucleus
nTPM: 98.7
2298 Female, age 72, unknown 114.2
2750 Male, age 76, both hemispheres 98.5
2016 Female, age 72, unknown 98.3
1828 Male, age 53, unknown 92.1
2047 Male, age 72, unknown 90.2
Inferior colliculus
nTPM: 94.4
2097 Female, age 72, unknown 99.1
1890 Male, age 53, unknown 96.2
1848 Female, age 42, unknown 95.8
2849 Male, age 72, unknown 86.7
Median raphe nucleus
nTPM: 85.4
2220 Male, age 76, midline 85.4
Periaquaductal grey, anterior
nTPM: 103.9
2502 Female, age 75, unknown 116.5
1947 Male, age 18, unknown 99.2
1795 Male, age 51, unknown 96.1
Periaquaductal grey, dorsal
nTPM: 91.5
2464 Female, age 72, unknown 96.8
1831 Male, age 72, unknown 94.0
1840 Male, age 53, unknown 91.2
2850 Male, age 76, both hemispheres 84.1
Periaquaductal grey, lateral
nTPM: 93.9
2053 Male, age 18, unknown 99.9
2272 Male, age 74, both hemispheres 94.0
2140 Male, age 76, both hemispheres 87.7
Pretectal area
nTPM: 101.9
2316 Male, age 76, right hemisphere 109.4
1815 Male, age 53, unknown 106.4
2007 Male, age 72, unknown 105.9
1817 Female, age 42, unknown 104.7
1816 Male, age 51, unknown 103.8
2407 Male, age 75, both hemispheres 102.0
2273 Male, age 74, both hemispheres 99.4
2825 Male, age 18, unknown 98.1
2224 Female, age 72, unknown 97.9
1944 Female, age 72, unknown 96.7
2667 Female, age 75, unknown 96.5
Red nucleus
nTPM: 103.9
2227 Male, age 72, unknown 110.3
1821 Female, age 72, unknown 110.1
2785 Male, age 18, unknown 110.0
2769 Male, age 72, unknown 109.4
1904 Male, age 53, unknown 108.9
1865 Male, age 51, unknown 108.5
1954 Female, age 42, unknown 102.6
2503 Female, age 72, unknown 101.6
2584 Male, age 75, left hemisphere 99.5
2588 Male, age 74, left hemisphere 98.7
2823 Male, age 76, right hemisphere 98.7
2725 Female, age 75, unknown 88.9
Substantia nigra
nTPM: 90.8
1851 Male, age 51, unknown 103.6
2590 Female, age 75, unknown 101.7
2583 Male, age 75, right hemisphere 100.5
2409 Female, age 72, unknown 94.5
2665 Male, age 74, both hemispheres 91.5
1889 Female, age 72, unknown 89.6
1941 Male, age 53, unknown 87.4
1916 Female, age 42, unknown 81.9
2241 Male, age 72, unknown 79.4
2699 Male, age 18, unknown 78.1
Superior colliculus
nTPM: 102.4
1913 Female, age 42, unknown 115.2
1995 Male, age 72, unknown 112.5
2587 Male, age 74, left hemisphere 109.5
2261 Male, age 18, unknown 105.6
2087 Female, age 72, unknown 101.3
2664 Male, age 75, both hemispheres 101.1
1796 Male, age 53, unknown 99.9
2668 Female, age 75, unknown 99.2
1839 Male, age 51, unknown 98.2
1895 Male, age 76, right hemisphere 81.8
Ventral tegmental area
nTPM: 93.7
2410 Female, age 72, unknown 104.2
2223 Female, age 72, unknown 102.1
2021 Male, age 53, unknown 96.3
1942 Male, age 51, unknown 92.3
1915 Female, age 42, unknown 85.0
2218 Male, age 76, both hemispheres 82.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.5
Samples: 183

Max nTPM: 119.1
Min nTPM: 45.5
Std nTPM: 13.9
Median nTPM: 68.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 113.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 109.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 106.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 106.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 105.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 102.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 102.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 102.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 99.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 66.9
Min nTPM: 52.8
Sample A Female 66.9
Sample B Female 52.8
Sample C Male 58.2
Sample D Male 57.8
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 83.1
Min nTPM: 52.5
Sample A Female 83.1
Sample B Female 52.5
Sample C Male 67.0
Sample D Male 55.4
Periaqueductal gray
nTPM: 57.6
Samples: 3

Max nTPM: 63.9
Min nTPM: 53.5
Sample B Female 55.3
Sample C Male 63.9
Sample D Male 53.5
Superior colliculi
nTPM: 63.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 58.1
Sample A Female 68.3
Sample B Female 67.9
Sample C Male 59.1
Sample D Male 58.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.5
Samples: 4

Max nTPM: 51.5
Min nTPM: 46.4
Sample A Male 50.0
Sample B Male 46.4
Sample C Female 51.5
Sample D Female 50.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
1071 Antisense, RP_Baylor_103076, Mouse strain C57BL/6J (56 days, male) 1.6

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