GFAP
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • GFAP
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:4141.8 nTPM
GTEx:2501.0 nTPM
FANTOM5:1479.6 Scaled Tags Per Million
Macaque:102.9 nTPM
Pig:878.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4141.8
Sample id Sample description nTPM
Putamen
nTPM: 4141.8
2647 Male, age 75, left hemisphere 5903.2
2489 Female, age 72, unknown 5872.4
1829 Male, age 74, unknown 4860.5
2482 Female, age 94, left hemisphere 4772.7
1937 Female, age 91, right hemisphere 2708.9
2466 Female, age 79, unknown 2485.5
1838 Male, age 80, right hemisphere 2389.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2501.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 2501.0
Samples: 254

Max nTPM: 13188.7
Min nTPM: 85.4
Std nTPM: 1972.6
Median nTPM: 2020.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 13188.7
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 11728.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 10646.3
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 10136.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 9666.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 7676.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 7371.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 7094.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 7056.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 6799.9
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 6289.6
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 6158.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 6133.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6057.7
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 5912.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5884.4
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 5760.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 5676.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 5629.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5583.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 5533.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5105.3
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 5033.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5006.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 4982.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 4756.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 4749.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 4690.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 4665.1
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 4624.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 4600.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 4574.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 4492.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 4428.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 4400.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 4293.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 4279.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 4276.9
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 4223.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 4202.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 4170.5
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 3982.6
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 3967.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 3954.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 3929.3
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 3891.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 3784.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3783.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3745.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 3688.4
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 3665.9
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 3606.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3573.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 3541.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 3513.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 3405.1
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 3326.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 3305.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 3300.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 3296.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3239.2
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 3214.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 3114.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 3057.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 3025.3
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 3023.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 3006.2
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 2997.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 2984.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2963.3
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 2962.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 2939.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 2921.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 2902.8
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 2894.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 2873.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 2771.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 2750.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 2726.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 2725.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2718.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 2706.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 2701.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 2666.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 2659.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 2646.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 2636.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 2625.2
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 2617.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 2608.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2596.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 2580.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 2559.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 2540.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2532.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 2530.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 2520.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 2497.3
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 2489.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 2468.7
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 2462.6
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 2410.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 2349.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 2336.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 2297.9
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 2282.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 2263.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 2254.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 2253.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 2229.4
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 2219.5
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 2214.9
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 2167.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 2152.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 2140.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 2125.7
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 2115.9
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 2111.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2108.2
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 2101.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2093.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 2090.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2078.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 2065.8
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 2060.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 2050.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2038.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2003.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1990.9
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 1981.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1979.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1979.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1932.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1882.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1878.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1864.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1861.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1861.1
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 1825.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1801.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1795.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1782.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1780.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1772.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1767.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1755.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1753.5
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 1723.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1714.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 1669.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1662.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 1622.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1621.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 1616.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1598.3
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 1581.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1572.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1514.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1506.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1496.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1489.8
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 1488.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1487.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1469.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1460.8
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 1452.6
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 1450.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1446.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1441.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1440.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1435.9
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 1435.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1423.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1405.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1402.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1361.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1351.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1348.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1336.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1308.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1304.6
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 1285.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1278.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1259.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1243.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1241.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1236.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1217.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1216.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1210.5
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 1209.0
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 1180.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1178.4
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 1173.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1159.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1146.7
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 1126.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1102.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1093.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1082.8
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 1080.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1070.4
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 1063.8
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 1029.4
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 1027.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1021.6
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 1018.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1006.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 972.6
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 972.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 967.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 966.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 963.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 962.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 956.2
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 911.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 869.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 840.6
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 840.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 827.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 823.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 807.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 803.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 803.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 702.8
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 700.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 698.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 697.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 693.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 682.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 678.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 669.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 662.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 660.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 622.2
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 600.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 562.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 546.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 530.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 529.1
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 520.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 492.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 492.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 481.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 445.5
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 412.8
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 390.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 367.6
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 313.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 312.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 286.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 239.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 160.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 85.4
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1479.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1479.6
FF:10176-103C5 60 years, female 1479.6

PUTAMEN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.9
Macaque sample Sample description nTPM
Putamen
nTPM: 102.9
Samples: 2

Max nTPM: 117.4
Min nTPM: 88.4
Sample A 88.4
Sample B 117.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

878.3
Pig sample Sample description nTPM
Putamen
nTPM: 878.3
Samples: 3

Max nTPM: 949.2
Min nTPM: 842.7
Sample B Female 842.9
Sample C Male 842.7
Sample D Male 949.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.