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  • PPT1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:78.1 nTPM
HPA Brain:88.8 nTPM
GTEx:78.1 nTPM
FANTOM5:131.6 Scaled Tags Per Million
Pig:107.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 77.6
1981 Female, age 72, midline 98.9
2048 Male, age 55, midline 81.7
2565 Male, age 75, midline 72.1
2194 Female, age 79, both hemispheres 70.2
2816 Male, age 47, midline 65.1
Cervical spinal cord, dorsal horn
nTPM: 88.8
2069 Male, age 47, both hemispheres 108.8
2173 Female, age 72, unknown 104.2
2296 Male, age 66, both hemispheres 84.2
2721 Male, age 90, both hemispheres 82.1
2297 Male, age 75, both hemispheres 78.0
1877 Male, age 55, unknown 75.5
Cervical spinal cord, ventral horn
nTPM: 75.7
2098 Female, age 72, unknown 105.4
2809 Male, age 90, both hemispheres 88.3
2480 Male, age 75, both hemispheres 71.2
2068 Male, age 55, unknown 69.9
2295 Male, age 66, both hemispheres 69.3
2820 Female, age 79, both hemispheres 49.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 78.1
Samples: 204

Max nTPM: 169.6
Min nTPM: 42.6
Std nTPM: 19.3
Median nTPM: 75.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 169.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 149.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 146.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 130.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 116.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 112.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 111.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 110.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 110.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 108.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 107.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 106.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 105.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 105.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 104.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 104.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 104.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 104.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 104.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 103.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 103.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 102.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 101.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 99.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 98.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 97.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 97.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 96.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 96.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 95.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 93.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 93.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 93.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 92.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 92.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 92.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 91.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 91.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 91.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 91.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 90.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 89.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 89.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 89.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 88.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 88.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 88.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 87.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 87.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 87.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 87.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 86.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 86.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 86.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 86.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 86.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 85.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 85.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 85.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 84.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 84.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 83.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 83.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 83.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 83.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 83.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 83.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 82.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 82.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 82.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 82.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 82.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 81.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 80.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 80.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 79.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 79.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 78.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 77.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 76.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 76.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 76.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 76.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 76.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 76.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 75.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 75.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 75.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 75.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 75.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 75.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 75.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 74.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 74.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 73.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 73.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 72.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 72.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 71.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 71.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 71.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 70.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 70.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 70.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 70.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 70.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 70.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 70.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 70.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 69.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 69.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 68.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 68.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 68.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 68.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 67.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 67.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 67.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 67.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 67.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 67.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 67.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 66.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 66.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 66.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 66.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 65.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 65.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 65.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 65.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 64.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 64.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 64.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 64.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 63.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 63.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 62.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 62.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 62.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 62.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 62.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 62.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 61.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 61.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 60.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 60.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 60.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 59.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 59.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 59.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 59.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 58.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 58.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 58.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 57.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 57.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 57.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 57.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 56.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 56.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 55.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 55.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 55.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 54.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 54.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 54.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 54.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 53.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 53.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 53.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 52.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 51.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 51.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 50.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 50.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 48.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 46.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 43.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 43.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 42.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 131.6
FF:10181-103D1 60 years, female 145.0
FF:10159-103A6 76 years, female 118.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 102.6
Samples: 4

Max nTPM: 117.6
Min nTPM: 91.6
Sample A Female 91.6
Sample B Female 102.2
Sample C Male 117.6
Sample D Male 99.1
Ventral spinal cord
nTPM: 107.6
Samples: 4

Max nTPM: 113.0
Min nTPM: 101.8
Sample A Female 101.8
Sample B Female 107.2
Sample C Male 108.2
Sample D Male 113.0

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