MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.4 nTPM
HPA Brain:77.7 nTPM
GTEx:82.4 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:107.4 nTPM
Mouse:117.0 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.1
2019 Male, age 18, unknown 76.4
1870 Female, age 42, unknown 71.4
1827 Male, age 72, unknown 68.0
1833 Male, age 53, unknown 66.1
2411 Female, age 72, unknown 65.5
1830 Male, age 51, unknown 62.6
2828 Female, age 72, unknown 62.2
2666 Male, age 74, left hemisphere 60.6
2586 Male, age 75, left hemisphere 59.7
2219 Male, age 76, both hemispheres 59.0
Dorsal raphe nucleus
nTPM: 75.0
2298 Female, age 72, unknown 91.7
2016 Female, age 72, unknown 77.2
1828 Male, age 53, unknown 76.6
2047 Male, age 72, unknown 65.8
2750 Male, age 76, both hemispheres 63.8
Inferior colliculus
nTPM: 77.7
2097 Female, age 72, unknown 89.0
1848 Female, age 42, unknown 80.7
1890 Male, age 53, unknown 71.4
2849 Male, age 72, unknown 69.5
Median raphe nucleus
nTPM: 62.2
2220 Male, age 76, midline 62.2
Periaquaductal grey, anterior
nTPM: 67.5
2502 Female, age 75, unknown 70.8
1947 Male, age 18, unknown 67.4
1795 Male, age 51, unknown 64.3
Periaquaductal grey, dorsal
nTPM: 74.0
1840 Male, age 53, unknown 80.7
2850 Male, age 76, both hemispheres 80.5
2464 Female, age 72, unknown 69.5
1831 Male, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 70.5
2140 Male, age 76, both hemispheres 76.0
2272 Male, age 74, both hemispheres 71.3
2053 Male, age 18, unknown 64.2
Pretectal area
nTPM: 74.4
1817 Female, age 42, unknown 88.8
2224 Female, age 72, unknown 83.0
2273 Male, age 74, both hemispheres 80.1
2007 Male, age 72, unknown 79.0
1816 Male, age 51, unknown 78.9
1944 Female, age 72, unknown 78.9
1815 Male, age 53, unknown 73.3
2667 Female, age 75, unknown 71.5
2825 Male, age 18, unknown 66.2
2316 Male, age 76, right hemisphere 62.9
2407 Male, age 75, both hemispheres 55.4
Red nucleus
nTPM: 65.6
1821 Female, age 72, unknown 81.8
2725 Female, age 75, unknown 77.0
2785 Male, age 18, unknown 68.4
2503 Female, age 72, unknown 67.5
1954 Female, age 42, unknown 66.8
2227 Male, age 72, unknown 65.9
1865 Male, age 51, unknown 65.8
2769 Male, age 72, unknown 65.0
1904 Male, age 53, unknown 63.8
2823 Male, age 76, right hemisphere 63.2
2588 Male, age 74, left hemisphere 55.5
2584 Male, age 75, left hemisphere 46.7
Substantia nigra
nTPM: 74.2
2241 Male, age 72, unknown 92.8
1916 Female, age 42, unknown 83.9
1941 Male, age 53, unknown 78.1
1889 Female, age 72, unknown 76.6
2665 Male, age 74, both hemispheres 74.6
1851 Male, age 51, unknown 73.5
2409 Female, age 72, unknown 69.9
2699 Male, age 18, unknown 66.8
2590 Female, age 75, unknown 66.2
2583 Male, age 75, right hemisphere 59.7
Superior colliculus
nTPM: 67.6
2587 Male, age 74, left hemisphere 74.2
1895 Male, age 76, right hemisphere 73.2
2261 Male, age 18, unknown 73.2
1839 Male, age 51, unknown 73.1
2087 Female, age 72, unknown 72.6
1796 Male, age 53, unknown 68.4
1995 Male, age 72, unknown 66.6
2668 Female, age 75, unknown 62.1
1913 Female, age 42, unknown 60.9
2664 Male, age 75, both hemispheres 52.0
Ventral tegmental area
nTPM: 69.5
2410 Female, age 72, unknown 83.5
1915 Female, age 42, unknown 73.4
2218 Male, age 76, both hemispheres 72.8
1942 Male, age 51, unknown 64.1
2021 Male, age 53, unknown 62.0
2223 Female, age 72, unknown 61.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.4
Samples: 183

Max nTPM: 164.0
Min nTPM: 45.5
Std nTPM: 17.6
Median nTPM: 81.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 164.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 123.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 121.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 120.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 117.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 116.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 115.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 113.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 109.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 108.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 107.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.9
Samples: 4

Max nTPM: 97.4
Min nTPM: 82.5
Sample A Female 97.4
Sample B Female 82.5
Sample C Male 90.7
Sample D Male 85.1
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 117.1
Min nTPM: 83.6
Sample A Female 117.1
Sample B Female 83.6
Sample C Male 98.0
Sample D Male 95.7
Periaqueductal gray
nTPM: 81.4
Samples: 3

Max nTPM: 84.1
Min nTPM: 78.2
Sample B Female 82.0
Sample C Male 84.1
Sample D Male 78.2
Superior colliculi
nTPM: 107.4
Samples: 4

Max nTPM: 113.2
Min nTPM: 99.4
Sample A Female 112.3
Sample B Female 104.7
Sample C Male 113.2
Sample D Male 99.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 117.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.1
Samples: 4

Max nTPM: 121.9
Min nTPM: 114.5
Sample A Male 114.5
Sample B Male 121.9
Sample C Female 115.5
Sample D Female 116.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69817264 Antisense, RP_050510_03_A01, Mouse strain C57BL/6J (56 days, male) 2.0
70919041 Antisense, RP_050712_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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