A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
35.5
nTPM
Schmiedel:
20.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 6
Max nTPM: 6.2
Min nTPM: 3.0
P10809_1003
3.0
P10809_1020
5.1
P10809_1039
4.6
P10809_1058
3.7
P10809_1080
6.2
P10809_1107
4.8
Intermediate monocyte nTPM: 6.4
Samples: 6
Max nTPM: 9.2
Min nTPM: 1.8
P10809_1004
7.7
P10809_1023
9.2
P10809_1042
7.2
P10809_1061
6.3
P10809_1081
6.1
P10809_1108
1.8
Non-classical monocyte nTPM: 5.6
Samples: 5
Max nTPM: 9.2
Min nTPM: 0.0
P10809_1005
5.3
P10809_1053
8.3
P10809_1072
0.0
P10809_1082
9.2
P10809_1109
5.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Monaco sample
nTPM
Classical monocyte nTPM: 21.1
Samples: 4
Max nTPM: 25.3
Min nTPM: 17.2
RHH5313_R3680
18.9
RHH5221_R3593
25.3
RHH5250_R3622
17.2
RHH5279_R3651
23.0
Intermediate monocyte nTPM: 23.6
Samples: 4
Max nTPM: 26.7
Min nTPM: 20.9
RHH5314_R3681
26.7
RHH5222_R3594
21.8
RHH5251_R3623
20.9
RHH5280_R3652
25.1
Non-classical monocyte nTPM: 35.5
Samples: 4
Max nTPM: 48.7
Min nTPM: 27.8
RHH5315_R3682
27.8
RHH5223_R3595
31.7
RHH5252_R3624
33.8
RHH5281_R3653
48.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
Schmiedel sample id
TPM
Classical monocyte TPM: 20.9
Samples: 91
Max TPM: 28.0
Min TPM: 15.3
MONOCYTES_1
28.0
MONOCYTES_2
26.8
MONOCYTES_3
26.7
MONOCYTES_4
26.7
MONOCYTES_5
25.5
MONOCYTES_6
25.4
MONOCYTES_7
25.3
MONOCYTES_8
25.3
MONOCYTES_9
25.2
MONOCYTES_10
24.9
MONOCYTES_11
24.7
MONOCYTES_12
24.2
MONOCYTES_13
23.1
MONOCYTES_14
23.1
MONOCYTES_15
23.0
MONOCYTES_16
22.9
MONOCYTES_17
22.8
MONOCYTES_18
22.8
MONOCYTES_19
22.7
MONOCYTES_20
22.7
MONOCYTES_21
22.5
MONOCYTES_22
22.5
MONOCYTES_23
22.4
MONOCYTES_24
22.4
MONOCYTES_25
22.3
MONOCYTES_26
22.1
MONOCYTES_27
22.0
MONOCYTES_28
22.0
MONOCYTES_29
22.0
MONOCYTES_30
22.0
MONOCYTES_31
21.9
MONOCYTES_32
21.9
MONOCYTES_33
21.8
MONOCYTES_34
21.8
MONOCYTES_35
21.8
MONOCYTES_36
21.7
MONOCYTES_37
21.6
MONOCYTES_38
21.6
MONOCYTES_39
21.5
MONOCYTES_40
21.4
MONOCYTES_41
21.2
MONOCYTES_42
21.1
MONOCYTES_43
21.1
MONOCYTES_44
21.1
MONOCYTES_45
21.0
MONOCYTES_46
20.6
MONOCYTES_47
20.6
MONOCYTES_48
20.5
MONOCYTES_49
20.5
MONOCYTES_50
20.3
MONOCYTES_51
20.3
MONOCYTES_52
20.1
MONOCYTES_53
20.1
MONOCYTES_54
20.1
MONOCYTES_55
20.1
MONOCYTES_56
20.0
MONOCYTES_57
20.0
MONOCYTES_58
20.0
MONOCYTES_59
19.8
MONOCYTES_60
19.8
MONOCYTES_61
19.5
MONOCYTES_62
19.4
MONOCYTES_63
19.4
MONOCYTES_64
19.3
MONOCYTES_65
19.2
MONOCYTES_66
19.1
MONOCYTES_67
19.1
MONOCYTES_68
19.0
MONOCYTES_69
19.0
MONOCYTES_70
19.0
MONOCYTES_71
18.8
MONOCYTES_72
18.7
MONOCYTES_73
18.6
MONOCYTES_74
18.5
MONOCYTES_75
18.5
MONOCYTES_76
18.4
MONOCYTES_77
18.2
MONOCYTES_78
18.2
MONOCYTES_79
18.2
MONOCYTES_80
18.1
MONOCYTES_81
17.9
MONOCYTES_82
17.9
MONOCYTES_83
17.7
MONOCYTES_84
17.6
MONOCYTES_85
17.4
MONOCYTES_86
17.4
MONOCYTES_87
17.3
MONOCYTES_88
17.2
MONOCYTES_89
16.9
MONOCYTES_90
16.8
MONOCYTES_91
15.3
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Non-classical monocyte TPM: 20.6
Samples: 90
Max TPM: 28.3
Min TPM: 16.7
M2_1
28.3
M2_2
26.1
M2_3
25.1
M2_4
25.0
M2_5
24.7
M2_6
24.3
M2_7
23.7
M2_8
23.5
M2_9
23.4
M2_10
23.3
M2_11
22.8
M2_12
22.7
M2_13
22.6
M2_14
22.5
M2_15
22.3
M2_16
22.0
M2_17
22.0
M2_18
21.9
M2_19
21.8
M2_20
21.7
M2_21
21.7
M2_22
21.6
M2_23
21.6
M2_24
21.6
M2_25
21.5
M2_26
21.4
M2_27
21.3
M2_28
21.2
M2_29
21.1
M2_30
21.1
M2_31
20.9
M2_32
20.9
M2_33
20.8
M2_34
20.7
M2_35
20.7
M2_36
20.7
M2_37
20.7
M2_38
20.6
M2_39
20.5
M2_40
20.5
M2_41
20.5
M2_42
20.4
M2_43
20.4
M2_44
20.4
M2_45
20.4
M2_46
20.2
M2_47
20.2
M2_48
20.2
M2_49
20.2
M2_50
20.1
M2_51
20.1
M2_52
20.1
M2_53
20.0
M2_54
19.9
M2_55
19.9
M2_56
19.8
M2_57
19.8
M2_58
19.8
M2_59
19.7
M2_60
19.7
M2_61
19.7
M2_62
19.7
M2_63
19.6
M2_64
19.6
M2_65
19.5
M2_66
19.5
M2_67
19.4
M2_68
19.3
M2_69
19.2
M2_70
19.1
M2_71
19.1
M2_72
19.0
M2_73
19.0
M2_74
19.0
M2_75
18.9
M2_76
18.9
M2_77
18.6
M2_78
18.5
M2_79
18.5
M2_80
18.3
M2_81
18.3
M2_82
18.3
M2_83
18.2
M2_84
17.9
M2_85
17.8
M2_86
17.5
M2_87
17.5
M2_88
17.0
M2_89
16.9
M2_90
16.7
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