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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1691.8 nTPM
GTEx:1691.8 nTPM
FANTOM5:105.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002649
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1691.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1691.8
Samples: 170

Max nTPM: 4920.3
Min nTPM: 946.3
Std nTPM: 450.6
Median nTPM: 1605.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4920.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4119.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2519.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2452.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2431.0
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2425.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2417.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2409.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2403.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2342.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2296.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2261.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2260.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2252.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2166.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2164.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2161.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2155.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2124.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2116.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2082.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2082.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2073.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2057.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2048.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2044.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2012.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2006.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1995.4
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1988.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1978.8
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1967.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1967.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1935.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1916.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1908.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1907.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1898.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1889.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1887.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1870.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1869.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1868.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1862.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1855.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1842.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1841.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1841.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1839.6
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1833.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1833.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1823.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1823.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1805.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1801.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1800.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1796.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1779.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1778.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1773.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1762.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1759.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1748.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1744.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1743.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1732.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1725.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1715.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1709.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1708.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1692.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1691.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1684.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1679.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1668.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1665.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1647.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1646.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1632.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1620.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1618.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1618.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1617.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1613.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1607.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 1603.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1602.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1602.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1600.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1597.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1581.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1581.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1574.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1574.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1565.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1561.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1561.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1559.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1554.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1554.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1548.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1546.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1545.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1540.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1537.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1536.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1533.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1522.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1516.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 1516.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1508.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1507.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1506.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1505.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1501.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1492.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1487.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1483.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1483.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1458.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1458.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1455.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1449.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1441.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1433.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1427.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1424.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1403.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1397.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1394.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1394.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1388.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1382.8
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1382.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1380.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1380.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1368.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1358.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1341.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1340.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1329.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1322.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1318.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1316.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1313.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1311.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1305.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1294.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1289.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1284.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1279.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1275.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1264.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1261.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1261.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1253.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1242.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1239.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1225.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1217.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1211.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1210.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1201.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1172.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1169.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1161.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1141.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1101.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1089.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 946.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 105.2
FF:10204-103F6 68 years, female 105.2

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