A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.6
nTPM
Monaco:
157.4
nTPM
Schmiedel:
116.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
HPA sample
nTPM
Classical monocyte nTPM: 8.9
Samples: 6
Max nTPM: 15.8
Min nTPM: 6.2
P10809_1003
15.8
P10809_1020
8.3
P10809_1039
6.4
P10809_1058
7.9
P10809_1080
6.2
P10809_1107
9.0
Intermediate monocyte nTPM: 14.6
Samples: 6
Max nTPM: 24.9
Min nTPM: 6.9
P10809_1004
24.9
P10809_1023
12.2
P10809_1042
10.7
P10809_1061
9.7
P10809_1081
6.9
P10809_1108
22.9
Non-classical monocyte nTPM: 19.6
Samples: 5
Max nTPM: 44.8
Min nTPM: 5.1
P10809_1005
44.8
P10809_1053
15.1
P10809_1072
5.1
P10809_1082
11.7
P10809_1109
21.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.4
Monaco sample
nTPM
Classical monocyte nTPM: 81.1
Samples: 4
Max nTPM: 135.8
Min nTPM: 51.9
RHH5313_R3680
65.0
RHH5221_R3593
135.8
RHH5250_R3622
51.9
RHH5279_R3651
71.5
Intermediate monocyte nTPM: 144.1
Samples: 4
Max nTPM: 210.1
Min nTPM: 91.8
RHH5314_R3681
115.6
RHH5222_R3594
210.1
RHH5251_R3623
158.8
RHH5280_R3652
91.8
Non-classical monocyte nTPM: 157.4
Samples: 4
Max nTPM: 186.7
Min nTPM: 96.4
RHH5315_R3682
186.7
RHH5223_R3595
161.9
RHH5252_R3624
184.6
RHH5281_R3653
96.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.6
Schmiedel sample id
TPM
Classical monocyte TPM: 108.3
Samples: 91
Max TPM: 183.1
Min TPM: 56.3
MONOCYTES_1
183.1
MONOCYTES_2
178.8
MONOCYTES_3
170.5
MONOCYTES_4
170.3
MONOCYTES_5
170.2
MONOCYTES_6
163.7
MONOCYTES_7
156.9
MONOCYTES_8
156.2
MONOCYTES_9
153.8
MONOCYTES_10
150.5
MONOCYTES_11
148.9
MONOCYTES_12
147.6
MONOCYTES_13
146.1
MONOCYTES_14
144.2
MONOCYTES_15
143.8
MONOCYTES_16
142.9
MONOCYTES_17
141.7
MONOCYTES_18
140.5
MONOCYTES_19
139.7
MONOCYTES_20
137.6
MONOCYTES_21
135.9
MONOCYTES_22
135.8
MONOCYTES_23
134.7
MONOCYTES_24
134.6
MONOCYTES_25
132.8
MONOCYTES_26
131.2
MONOCYTES_27
130.4
MONOCYTES_28
128.0
MONOCYTES_29
126.8
MONOCYTES_30
125.8
MONOCYTES_31
124.4
MONOCYTES_32
123.5
MONOCYTES_33
122.0
MONOCYTES_34
119.8
MONOCYTES_35
115.5
MONOCYTES_36
113.4
MONOCYTES_37
112.0
MONOCYTES_38
111.3
MONOCYTES_39
110.2
MONOCYTES_40
109.6
MONOCYTES_41
109.0
MONOCYTES_42
108.8
MONOCYTES_43
108.2
MONOCYTES_44
107.8
MONOCYTES_45
107.5
MONOCYTES_46
106.7
MONOCYTES_47
105.9
MONOCYTES_48
105.3
MONOCYTES_49
104.3
MONOCYTES_50
103.9
MONOCYTES_51
101.3
MONOCYTES_52
99.5
MONOCYTES_53
99.3
MONOCYTES_54
98.2
MONOCYTES_55
97.6
MONOCYTES_56
96.3
MONOCYTES_57
95.2
MONOCYTES_58
94.6
MONOCYTES_59
94.1
MONOCYTES_60
94.0
MONOCYTES_61
93.4
MONOCYTES_62
87.3
MONOCYTES_63
86.5
MONOCYTES_64
85.4
MONOCYTES_65
84.3
MONOCYTES_66
84.1
MONOCYTES_67
82.5
MONOCYTES_68
82.4
MONOCYTES_69
82.2
MONOCYTES_70
81.3
MONOCYTES_71
79.0
MONOCYTES_72
77.9
MONOCYTES_73
77.8
MONOCYTES_74
77.1
MONOCYTES_75
74.9
MONOCYTES_76
70.4
MONOCYTES_77
69.2
MONOCYTES_78
67.8
MONOCYTES_79
66.1
MONOCYTES_80
65.4
MONOCYTES_81
65.0
MONOCYTES_82
65.0
MONOCYTES_83
63.8
MONOCYTES_84
63.0
MONOCYTES_85
62.7
MONOCYTES_86
61.8
MONOCYTES_87
61.1
MONOCYTES_88
60.3
MONOCYTES_89
59.6
MONOCYTES_90
59.6
MONOCYTES_91
56.3
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Non-classical monocyte TPM: 116.6
Samples: 90
Max TPM: 235.1
Min TPM: 32.9
M2_1
235.1
M2_2
215.2
M2_3
193.8
M2_4
190.1
M2_5
185.2
M2_6
182.4
M2_7
181.2
M2_8
181.2
M2_9
178.5
M2_10
178.0
M2_11
176.5
M2_12
172.4
M2_13
171.8
M2_14
168.1
M2_15
167.5
M2_16
159.8
M2_17
159.5
M2_18
158.7
M2_19
157.0
M2_20
156.7
M2_21
151.5
M2_22
151.3
M2_23
149.2
M2_24
146.8
M2_25
145.6
M2_26
145.6
M2_27
143.2
M2_28
139.5
M2_29
138.7
M2_30
135.5
M2_31
133.7
M2_32
132.7
M2_33
131.6
M2_34
131.5
M2_35
126.1
M2_36
125.3
M2_37
123.5
M2_38
123.2
M2_39
122.5
M2_40
122.1
M2_41
121.6
M2_42
121.4
M2_43
118.9
M2_44
118.6
M2_45
118.5
M2_46
117.9
M2_47
114.5
M2_48
113.2
M2_49
112.5
M2_50
111.5
M2_51
109.6
M2_52
107.8
M2_53
105.9
M2_54
105.1
M2_55
104.5
M2_56
104.5
M2_57
104.2
M2_58
96.8
M2_59
96.3
M2_60
96.1
M2_61
92.9
M2_62
90.6
M2_63
90.0
M2_64
89.5
M2_65
87.9
M2_66
86.7
M2_67
86.7
M2_68
85.8
M2_69
84.1
M2_70
81.6
M2_71
77.8
M2_72
73.5
M2_73
72.5
M2_74
69.0
M2_75
67.7
M2_76
60.6
M2_77
60.3
M2_78
59.2
M2_79
58.8
M2_80
58.5
M2_81
58.4
M2_82
56.1
M2_83
54.6
M2_84
54.5
M2_85
50.9
M2_86
47.2
M2_87
43.5
M2_88
41.7
M2_89
36.1
M2_90
32.9
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