A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
0.6
nTPM
Schmiedel:
9.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.5
P10809_1003
0.5
P10809_1020
1.3
P10809_1039
1.1
P10809_1058
1.6
P10809_1080
0.8
P10809_1107
1.5
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1004
0.5
P10809_1023
0.4
P10809_1042
0.4
P10809_1061
0.0
P10809_1081
0.6
P10809_1108
0.1
Non-classical monocyte nTPM: 0.7
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.4
P10809_1005
0.4
P10809_1053
0.8
P10809_1072
0.4
P10809_1082
1.4
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
Monaco sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 4
Max nTPM: 1.3
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
0.1
RHH5250_R3622
0.6
RHH5279_R3651
1.3
Intermediate monocyte nTPM: 0.6
Samples: 4
Max nTPM: 1.3
Min nTPM: 0.0
RHH5314_R3681
0.5
RHH5222_R3594
0.0
RHH5251_R3623
0.7
RHH5280_R3652
1.3
Non-classical monocyte nTPM: 0.7
Samples: 4
Max nTPM: 1.1
Min nTPM: 0.2
RHH5315_R3682
0.6
RHH5223_R3595
1.1
RHH5252_R3624
0.2
RHH5281_R3653
0.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
Schmiedel sample id
TPM
Classical monocyte TPM: 9.3
Samples: 91
Max TPM: 18.5
Min TPM: 3.2
MONOCYTES_1
18.5
MONOCYTES_2
17.9
MONOCYTES_3
17.8
MONOCYTES_4
17.0
MONOCYTES_5
16.3
MONOCYTES_6
16.2
MONOCYTES_7
15.5
MONOCYTES_8
15.5
MONOCYTES_9
15.2
MONOCYTES_10
15.1
MONOCYTES_11
14.4
MONOCYTES_12
14.3
MONOCYTES_13
14.3
MONOCYTES_14
14.2
MONOCYTES_15
13.9
MONOCYTES_16
13.3
MONOCYTES_17
13.2
MONOCYTES_18
12.9
MONOCYTES_19
12.6
MONOCYTES_20
12.5
MONOCYTES_21
12.4
MONOCYTES_22
12.3
MONOCYTES_23
12.3
MONOCYTES_24
12.2
MONOCYTES_25
12.0
MONOCYTES_26
11.9
MONOCYTES_27
11.8
MONOCYTES_28
11.7
MONOCYTES_29
11.6
MONOCYTES_30
11.2
MONOCYTES_31
11.1
MONOCYTES_32
11.0
MONOCYTES_33
10.9
MONOCYTES_34
10.8
MONOCYTES_35
10.3
MONOCYTES_36
10.2
MONOCYTES_37
9.9
MONOCYTES_38
9.2
MONOCYTES_39
9.1
MONOCYTES_40
8.9
MONOCYTES_41
8.8
MONOCYTES_42
8.7
MONOCYTES_43
8.7
MONOCYTES_44
8.7
MONOCYTES_45
8.7
MONOCYTES_46
8.5
MONOCYTES_47
8.4
MONOCYTES_48
8.4
MONOCYTES_49
8.1
MONOCYTES_50
8.0
MONOCYTES_51
7.9
MONOCYTES_52
7.9
MONOCYTES_53
7.8
MONOCYTES_54
7.8
MONOCYTES_55
7.6
MONOCYTES_56
7.6
MONOCYTES_57
7.5
MONOCYTES_58
7.5
MONOCYTES_59
7.4
MONOCYTES_60
7.4
MONOCYTES_61
7.3
MONOCYTES_62
7.3
MONOCYTES_63
7.1
MONOCYTES_64
6.9
MONOCYTES_65
6.8
MONOCYTES_66
6.8
MONOCYTES_67
6.5
MONOCYTES_68
6.4
MONOCYTES_69
6.3
MONOCYTES_70
6.1
MONOCYTES_71
6.0
MONOCYTES_72
6.0
MONOCYTES_73
5.9
MONOCYTES_74
5.6
MONOCYTES_75
5.4
MONOCYTES_76
5.3
MONOCYTES_77
5.3
MONOCYTES_78
5.2
MONOCYTES_79
5.1
MONOCYTES_80
5.0
MONOCYTES_81
4.9
MONOCYTES_82
4.3
MONOCYTES_83
4.0
MONOCYTES_84
4.0
MONOCYTES_85
4.0
MONOCYTES_86
3.7
MONOCYTES_87
3.6
MONOCYTES_88
3.5
MONOCYTES_89
3.3
MONOCYTES_90
3.3
MONOCYTES_91
3.2
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Non-classical monocyte TPM: 9.1
Samples: 90
Max TPM: 20.1
Min TPM: 1.9
M2_1
20.1
M2_2
18.8
M2_3
18.3
M2_4
17.9
M2_5
17.1
M2_6
16.4
M2_7
16.3
M2_8
16.2
M2_9
16.0
M2_10
15.9
M2_11
15.9
M2_12
15.8
M2_13
15.7
M2_14
15.3
M2_15
15.1
M2_16
15.0
M2_17
14.6
M2_18
14.1
M2_19
13.3
M2_20
12.8
M2_21
12.7
M2_22
12.7
M2_23
12.5
M2_24
12.2
M2_25
12.2
M2_26
11.8
M2_27
11.8
M2_28
11.6
M2_29
11.3
M2_30
11.1
M2_31
10.9
M2_32
10.8
M2_33
10.6
M2_34
10.6
M2_35
10.2
M2_36
9.7
M2_37
9.7
M2_38
9.4
M2_39
9.3
M2_40
9.3
M2_41
9.2
M2_42
9.0
M2_43
9.0
M2_44
8.7
M2_45
8.6
M2_46
8.6
M2_47
8.6
M2_48
8.4
M2_49
8.3
M2_50
8.2
M2_51
8.1
M2_52
7.9
M2_53
7.7
M2_54
7.2
M2_55
7.1
M2_56
7.1
M2_57
7.0
M2_58
6.9
M2_59
6.8
M2_60
6.5
M2_61
6.2
M2_62
6.2
M2_63
6.1
M2_64
6.0
M2_65
5.9
M2_66
5.9
M2_67
5.6
M2_68
5.5
M2_69
5.3
M2_70
5.0
M2_71
5.0
M2_72
4.5
M2_73
4.3
M2_74
4.2
M2_75
4.2
M2_76
3.7
M2_77
3.2
M2_78
3.1
M2_79
3.1
M2_80
3.0
M2_81
3.0
M2_82
2.9
M2_83
2.9
M2_84
2.8
M2_85
2.8
M2_86
2.4
M2_87
2.3
M2_88
2.2
M2_89
2.1
M2_90
1.9
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