A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.7
nTPM
Monaco:
16.7
nTPM
Schmiedel:
20.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
HPA sample
nTPM
NK-cell nTPM: 13.6
Samples: 6
Max nTPM: 24.2
Min nTPM: 7.8
P10809_1013
10.1
P10809_1033
10.5
P10809_1052
24.2
P10809_1071
15.5
P10809_1093
13.7
P10809_1103
7.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
Monaco sample
nTPM
NK-cell nTPM: 16.7
Samples: 4
Max nTPM: 20.4
Min nTPM: 11.2
RHH5316_R3683
18.5
RHH5224_R3596
16.5
RHH5253_R3625
11.2
RHH5282_R3654
20.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.6
Schmiedel sample id
TPM
NK-cell TPM: 20.6
Samples: 90
Max TPM: 26.3
Min TPM: 10.8
NK_1
26.3
NK_2
25.4
NK_3
25.0
NK_4
24.9
NK_5
24.9
NK_6
24.8
NK_7
24.8
NK_8
24.6
NK_9
24.6
NK_10
24.4
NK_11
24.3
NK_12
24.3
NK_13
24.2
NK_14
24.1
NK_15
23.7
NK_16
23.6
NK_17
23.1
NK_18
23.0
NK_19
22.9
NK_20
22.7
NK_21
22.7
NK_22
22.5
NK_23
22.4
NK_24
22.3
NK_25
22.0
NK_26
21.9
NK_27
21.8
NK_28
21.7
NK_29
21.6
NK_30
21.5
NK_31
21.4
NK_32
21.4
NK_33
21.3
NK_34
21.2
NK_35
21.2
NK_36
21.0
NK_37
21.0
NK_38
20.9
NK_39
20.9
NK_40
20.8
NK_41
20.8
NK_42
20.7
NK_43
20.5
NK_44
20.5
NK_45
20.4
NK_46
20.4
NK_47
20.3
NK_48
20.3
NK_49
20.3
NK_50
20.3
NK_51
20.3
NK_52
20.2
NK_53
20.1
NK_54
19.8
NK_55
19.7
NK_56
19.6
NK_57
19.5
NK_58
19.4
NK_59
19.4
NK_60
19.4
NK_61
19.3
NK_62
19.3
NK_63
19.3
NK_64
19.2
NK_65
19.1
NK_66
19.1
NK_67
19.1
NK_68
19.0
NK_69
18.9
NK_70
18.9
NK_71
18.9
NK_72
18.8
NK_73
18.7
NK_74
18.7
NK_75
18.6
NK_76
18.5
NK_77
18.4
NK_78
18.3
NK_79
18.2
NK_80
17.9
NK_81
17.6
NK_82
17.3
NK_83
17.2
NK_84
17.1
NK_85
16.8
NK_86
16.7
NK_87
16.4
NK_88
14.6
NK_89
12.5
NK_90
10.8
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