We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RAN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RAN
TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:176.8 nTPM
HPA Brain:177.7 nTPM
GTEx:176.8 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:57.0 nTPM
Mouse:181.3 nTPM
Allen mouse:16.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.7
Sample id Sample description nTPM
Amygdala
nTPM: 177.7
1987 Female, age 91, left hemisphere 203.6
2814 Male, age 76, right hemisphere 191.6
2514 Male, age 75, right hemisphere 179.2
2695 Female, age 67, right hemisphere 160.9
2517 Female, age 94, left hemisphere 153.4
Basal amygdala
nTPM: 138.8
2243 Female, age 91, right hemisphere 168.4
2110 Male, age 80, left hemisphere 166.2
2609 Male, age 75, right hemisphere 157.1
1955 Male, age 76, both hemispheres 143.8
2685 Female, age 94, left hemisphere 115.9
2827 Female, age 67, right hemisphere 81.7
Central amygdala
nTPM: 154.9
1905 Male, age 76, both hemispheres 175.5
2515 Male, age 75, right hemisphere 171.1
2239 Male, age 80, left hemisphere 146.8
2826 Female, age 94, left hemisphere 141.9
2701 Female, age 91, right hemisphere 138.9
Corticomedial amygdala
nTPM: 153.0
2428 Male, age 75, right hemisphere 186.9
2829 Male, age 80, left hemisphere 174.8
2242 Female, age 91, right hemisphere 161.7
2429 Female, age 94, left hemisphere 158.6
2240 Male, age 76, both hemispheres 141.0
2535 Female, age 67, right hemisphere 95.0
Lateral amygdala
nTPM: 134.1
2516 Male, age 75, right hemisphere 173.0
1883 Male, age 76, both hemispheres 167.4
2534 Female, age 94, left hemisphere 128.6
2255 Female, age 91, right hemisphere 123.7
2256 Male, age 80, left hemisphere 121.3
2830 Female, age 67, right hemisphere 90.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 176.8
Samples: 181

Max nTPM: 297.7
Min nTPM: 75.9
Std nTPM: 38.3
Median nTPM: 169.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 297.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 283.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 278.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 278.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 267.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 266.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 265.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 262.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 248.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 246.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 245.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 244.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 238.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 229.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 229.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 229.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 229.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 225.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 223.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 222.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 222.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 221.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 221.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 220.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 219.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 217.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 217.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 216.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 213.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 211.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 209.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 209.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 208.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 207.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 206.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 205.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 205.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 205.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 205.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 202.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 201.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 201.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 200.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 199.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 198.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 198.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 198.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 197.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 197.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 196.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 195.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 193.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 193.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 190.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 190.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 189.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 189.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 189.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 187.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 186.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 185.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 185.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 184.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 184.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 183.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 182.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 182.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 181.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 181.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 180.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 180.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 180.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 179.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 179.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 176.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 174.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 174.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 172.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 172.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 171.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 171.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 170.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 169.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 169.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 169.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 167.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 167.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 167.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 167.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 165.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 164.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 164.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 163.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 163.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 162.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 161.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 161.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 159.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 159.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 159.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 159.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 159.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 158.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 157.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 157.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 156.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 156.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 155.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 155.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 153.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 153.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 152.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 152.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 152.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 151.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 151.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 150.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 150.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 150.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 150.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 150.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 150.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 149.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 148.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 148.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 148.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 147.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 147.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 147.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 146.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 145.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 145.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 144.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 144.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 144.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 143.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 142.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 142.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 141.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 140.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 139.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 138.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 138.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 137.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 137.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 136.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 135.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 134.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 133.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 133.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 130.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 124.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 122.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 117.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 115.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 107.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 75.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.3
FF:10151-102I7 76 years, female 151.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.0
Pig sample Sample description nTPM
Amygdala
nTPM: 57.0
Samples: 4

Max nTPM: 75.1
Min nTPM: 47.9
Sample A Female 75.1
Sample B Female 55.6
Sample C Male 49.5
Sample D Male 47.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 181.4
Samples: 4

Max nTPM: 196.7
Min nTPM: 166.4
Sample A Male 190.5
Sample B Male 196.7
Sample C Female 166.4
Sample D Female 171.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.6
2518 Antisense, RP_040420_01_F04, Mouse strain C57BL/6J (56 days, male) 16.6
2517 Antisense, RP_040420_01_F04, Mouse strain C57BL/6J (56 days, male) 13.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo