A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.6
nTPM
Monaco:
29.6
nTPM
Schmiedel:
39.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.6
HPA sample
nTPM
Classical monocyte nTPM: 10.8
Samples: 6
Max nTPM: 12.6
Min nTPM: 8.7
P10809_1003
9.2
P10809_1020
11.4
P10809_1039
8.7
P10809_1058
11.7
P10809_1080
10.9
P10809_1107
12.6
Intermediate monocyte nTPM: 12.6
Samples: 6
Max nTPM: 21.0
Min nTPM: 7.4
P10809_1004
9.9
P10809_1023
13.2
P10809_1042
7.4
P10809_1061
21.0
P10809_1081
11.7
P10809_1108
12.5
Non-classical monocyte nTPM: 11.3
Samples: 5
Max nTPM: 16.8
Min nTPM: 4.4
P10809_1005
9.5
P10809_1053
14.0
P10809_1072
4.4
P10809_1082
16.8
P10809_1109
12.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Monaco sample
nTPM
Classical monocyte nTPM: 23.6
Samples: 4
Max nTPM: 29.3
Min nTPM: 19.1
RHH5313_R3680
19.1
RHH5221_R3593
21.1
RHH5250_R3622
29.3
RHH5279_R3651
25.0
Intermediate monocyte nTPM: 29.6
Samples: 4
Max nTPM: 39.7
Min nTPM: 20.1
RHH5314_R3681
23.2
RHH5222_R3594
20.1
RHH5251_R3623
35.5
RHH5280_R3652
39.7
Non-classical monocyte nTPM: 26.2
Samples: 4
Max nTPM: 34.6
Min nTPM: 7.1
RHH5315_R3682
28.8
RHH5223_R3595
7.1
RHH5252_R3624
34.6
RHH5281_R3653
34.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.4
Schmiedel sample id
TPM
Classical monocyte TPM: 19.9
Samples: 91
Max TPM: 28.7
Min TPM: 12.2
MONOCYTES_1
28.7
MONOCYTES_2
26.4
MONOCYTES_3
26.1
MONOCYTES_4
25.2
MONOCYTES_5
25.0
MONOCYTES_6
24.4
MONOCYTES_7
24.3
MONOCYTES_8
24.2
MONOCYTES_9
23.8
MONOCYTES_10
23.6
MONOCYTES_11
23.5
MONOCYTES_12
23.4
MONOCYTES_13
23.4
MONOCYTES_14
23.3
MONOCYTES_15
23.2
MONOCYTES_16
22.9
MONOCYTES_17
22.8
MONOCYTES_18
22.7
MONOCYTES_19
22.7
MONOCYTES_20
22.7
MONOCYTES_21
22.2
MONOCYTES_22
22.1
MONOCYTES_23
22.0
MONOCYTES_24
21.7
MONOCYTES_25
21.6
MONOCYTES_26
21.6
MONOCYTES_27
21.6
MONOCYTES_28
21.5
MONOCYTES_29
21.5
MONOCYTES_30
21.5
MONOCYTES_31
20.9
MONOCYTES_32
20.9
MONOCYTES_33
20.8
MONOCYTES_34
20.8
MONOCYTES_35
20.7
MONOCYTES_36
20.7
MONOCYTES_37
20.6
MONOCYTES_38
20.5
MONOCYTES_39
20.5
MONOCYTES_40
20.5
MONOCYTES_41
20.3
MONOCYTES_42
20.3
MONOCYTES_43
20.3
MONOCYTES_44
20.2
MONOCYTES_45
20.0
MONOCYTES_46
19.9
MONOCYTES_47
19.9
MONOCYTES_48
19.9
MONOCYTES_49
19.8
MONOCYTES_50
19.7
MONOCYTES_51
19.7
MONOCYTES_52
19.6
MONOCYTES_53
19.4
MONOCYTES_54
19.3
MONOCYTES_55
19.3
MONOCYTES_56
19.2
MONOCYTES_57
19.2
MONOCYTES_58
18.9
MONOCYTES_59
18.8
MONOCYTES_60
18.7
MONOCYTES_61
18.7
MONOCYTES_62
18.7
MONOCYTES_63
18.7
MONOCYTES_64
18.3
MONOCYTES_65
18.1
MONOCYTES_66
18.1
MONOCYTES_67
17.9
MONOCYTES_68
17.9
MONOCYTES_69
17.8
MONOCYTES_70
17.8
MONOCYTES_71
17.7
MONOCYTES_72
17.7
MONOCYTES_73
17.5
MONOCYTES_74
17.4
MONOCYTES_75
17.3
MONOCYTES_76
17.3
MONOCYTES_77
17.3
MONOCYTES_78
17.2
MONOCYTES_79
16.9
MONOCYTES_80
16.8
MONOCYTES_81
16.8
MONOCYTES_82
16.4
MONOCYTES_83
15.0
MONOCYTES_84
14.9
MONOCYTES_85
14.7
MONOCYTES_86
14.6
MONOCYTES_87
14.5
MONOCYTES_88
14.3
MONOCYTES_89
13.3
MONOCYTES_90
12.4
MONOCYTES_91
12.2
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Non-classical monocyte TPM: 39.4
Samples: 90
Max TPM: 55.3
Min TPM: 28.3
M2_1
55.3
M2_2
51.1
M2_3
50.2
M2_4
50.1
M2_5
49.8
M2_6
49.5
M2_7
48.8
M2_8
48.4
M2_9
47.6
M2_10
47.6
M2_11
47.2
M2_12
46.8
M2_13
46.5
M2_14
46.2
M2_15
46.1
M2_16
46.1
M2_17
45.5
M2_18
44.7
M2_19
44.1
M2_20
44.1
M2_21
44.0
M2_22
43.6
M2_23
43.5
M2_24
43.3
M2_25
43.3
M2_26
43.1
M2_27
42.5
M2_28
42.3
M2_29
42.3
M2_30
42.0
M2_31
41.8
M2_32
41.7
M2_33
41.3
M2_34
41.2
M2_35
41.1
M2_36
41.1
M2_37
41.0
M2_38
40.7
M2_39
40.7
M2_40
40.2
M2_41
39.7
M2_42
39.7
M2_43
39.5
M2_44
39.4
M2_45
39.2
M2_46
39.2
M2_47
39.2
M2_48
39.0
M2_49
39.0
M2_50
38.9
M2_51
38.8
M2_52
38.7
M2_53
38.4
M2_54
38.1
M2_55
37.9
M2_56
37.3
M2_57
37.1
M2_58
36.8
M2_59
36.7
M2_60
36.5
M2_61
36.4
M2_62
36.3
M2_63
36.1
M2_64
36.0
M2_65
36.0
M2_66
35.6
M2_67
35.2
M2_68
35.1
M2_69
35.0
M2_70
34.3
M2_71
33.9
M2_72
33.7
M2_73
33.6
M2_74
33.2
M2_75
32.9
M2_76
32.6
M2_77
32.4
M2_78
32.3
M2_79
32.0
M2_80
31.6
M2_81
31.6
M2_82
30.8
M2_83
30.7
M2_84
30.5
M2_85
29.8
M2_86
29.7
M2_87
29.2
M2_88
28.7
M2_89
28.5
M2_90
28.3
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