MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:330.6 nTPM
HPA Brain:345.5 nTPM
GTEx:330.6 nTPM
FANTOM5:303.7 Scaled Tags Per Million
Pig:10.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 345.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 293.5
1870 Female, age 42, unknown 351.5
2828 Female, age 72, unknown 350.2
2411 Female, age 72, unknown 324.3
1830 Male, age 51, unknown 321.7
1833 Male, age 53, unknown 307.3
2586 Male, age 75, left hemisphere 305.2
1827 Male, age 72, unknown 297.4
2019 Male, age 18, unknown 291.0
2666 Male, age 74, left hemisphere 193.8
2219 Male, age 76, both hemispheres 192.7
Dorsal raphe nucleus
nTPM: 302.3
2298 Female, age 72, unknown 353.1
2016 Female, age 72, unknown 322.0
2750 Male, age 76, both hemispheres 304.8
1828 Male, age 53, unknown 282.2
2047 Male, age 72, unknown 249.2
Inferior colliculus
nTPM: 283.4
1848 Female, age 42, unknown 307.3
1890 Male, age 53, unknown 294.2
2097 Female, age 72, unknown 271.3
2849 Male, age 72, unknown 260.9
Median raphe nucleus
nTPM: 274.8
2220 Male, age 76, midline 274.8
Periaquaductal grey, anterior
nTPM: 303.4
2502 Female, age 75, unknown 331.7
1947 Male, age 18, unknown 294.1
1795 Male, age 51, unknown 284.4
Periaquaductal grey, dorsal
nTPM: 305.0
1831 Male, age 72, unknown 331.3
2850 Male, age 76, both hemispheres 325.0
1840 Male, age 53, unknown 295.4
2464 Female, age 72, unknown 268.4
Periaquaductal grey, lateral
nTPM: 334.6
2272 Male, age 74, both hemispheres 370.3
2140 Male, age 76, both hemispheres 352.4
2053 Male, age 18, unknown 280.9
Pretectal area
nTPM: 293.0
2273 Male, age 74, both hemispheres 377.0
2316 Male, age 76, right hemisphere 373.6
2407 Male, age 75, both hemispheres 326.6
2224 Female, age 72, unknown 308.8
2825 Male, age 18, unknown 308.4
2667 Female, age 75, unknown 283.3
1817 Female, age 42, unknown 280.5
1815 Male, age 53, unknown 276.2
2007 Male, age 72, unknown 265.8
1944 Female, age 72, unknown 216.4
1816 Male, age 51, unknown 206.0
Red nucleus
nTPM: 345.5
2227 Male, age 72, unknown 410.2
1865 Male, age 51, unknown 404.1
2503 Female, age 72, unknown 395.5
1904 Male, age 53, unknown 391.9
2769 Male, age 72, unknown 390.2
2785 Male, age 18, unknown 376.3
1821 Female, age 72, unknown 370.5
1954 Female, age 42, unknown 340.7
2823 Male, age 76, right hemisphere 294.4
2588 Male, age 74, left hemisphere 271.5
2725 Female, age 75, unknown 262.3
2584 Male, age 75, left hemisphere 238.0
Substantia nigra
nTPM: 242.3
2590 Female, age 75, unknown 304.8
2699 Male, age 18, unknown 303.1
1889 Female, age 72, unknown 275.8
1851 Male, age 51, unknown 272.3
1916 Female, age 42, unknown 248.4
2583 Male, age 75, right hemisphere 231.6
2665 Male, age 74, both hemispheres 231.3
1941 Male, age 53, unknown 204.8
2409 Female, age 72, unknown 192.4
2241 Male, age 72, unknown 158.6
Superior colliculus
nTPM: 300.1
1995 Male, age 72, unknown 402.4
1913 Female, age 42, unknown 353.2
1796 Male, age 53, unknown 331.8
2587 Male, age 74, left hemisphere 318.6
1895 Male, age 76, right hemisphere 290.3
1839 Male, age 51, unknown 290.1
2668 Female, age 75, unknown 277.9
2664 Male, age 75, both hemispheres 260.9
2087 Female, age 72, unknown 239.3
2261 Male, age 18, unknown 236.0
Ventral tegmental area
nTPM: 278.2
2410 Female, age 72, unknown 305.4
1915 Female, age 42, unknown 280.4
2223 Female, age 72, unknown 279.3
1942 Male, age 51, unknown 277.5
2218 Male, age 76, both hemispheres 270.2
2021 Male, age 53, unknown 256.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 330.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 330.6
Samples: 183

Max nTPM: 940.3
Min nTPM: 125.1
Std nTPM: 120.7
Median nTPM: 302.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 940.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 823.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 705.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 688.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 687.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 673.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 636.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 628.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 540.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 531.3
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 527.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 303.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 303.7
FF:10158-103A5 76 years, female 303.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 7.9
Sample C Male 8.7
Sample D Male 13.1
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 11.5
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 8.1
Sample C Male 7.5
Sample D Male 11.5
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.6
Min nTPM: 9.0
Sample B Female 9.7
Sample C Male 9.0
Sample D Male 13.6
Superior colliculi
nTPM: 5.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 5.0
Sample C Male 7.1
Sample D Male 7.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo