We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
H3-3B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • H3-3B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:416.6 nTPM
HPA Brain:373.3 nTPM
GTEx:416.6 nTPM
FANTOM5:317.6 Scaled Tags Per Million
Pig:5.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 368.3
1981 Female, age 72, midline 505.9
2565 Male, age 75, midline 374.9
2194 Female, age 79, both hemispheres 359.2
2816 Male, age 47, midline 336.2
2048 Male, age 55, midline 265.5
Cervical spinal cord, dorsal horn
nTPM: 373.3
2173 Female, age 72, unknown 460.9
2069 Male, age 47, both hemispheres 417.2
2296 Male, age 66, both hemispheres 411.5
1877 Male, age 55, unknown 336.3
2297 Male, age 75, both hemispheres 311.0
2721 Male, age 90, both hemispheres 302.6
Cervical spinal cord, ventral horn
nTPM: 357.2
2098 Female, age 72, unknown 526.0
2809 Male, age 90, both hemispheres 430.7
2480 Male, age 75, both hemispheres 345.2
2068 Male, age 55, unknown 323.5
2295 Male, age 66, both hemispheres 268.1
2820 Female, age 79, both hemispheres 249.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

416.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 416.6
Samples: 204

Max nTPM: 919.1
Min nTPM: 169.3
Std nTPM: 124.5
Median nTPM: 388.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 919.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 797.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 767.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 757.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 733.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 730.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 711.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 704.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 702.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 691.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 689.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 666.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 658.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 629.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 626.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 621.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 616.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 616.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 612.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 589.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 579.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 575.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 568.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 566.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 564.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 549.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 547.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 546.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 546.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 542.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 542.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 541.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 538.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 533.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 530.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 526.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 521.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 519.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 517.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 516.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 513.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 508.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 507.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 500.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 491.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 491.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 490.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 487.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 487.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 481.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 479.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 478.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 478.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 475.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 468.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 464.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 461.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 461.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 459.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 457.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 457.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 452.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 450.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 449.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 448.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 448.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 446.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 444.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 439.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 438.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 435.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 430.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 427.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 422.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 419.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 419.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 418.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 416.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 415.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 414.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 411.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 409.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 408.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 407.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 407.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 406.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 406.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 406.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 404.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 404.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 404.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 403.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 401.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 397.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 397.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 396.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 396.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 395.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 395.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 392.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 392.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 389.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 388.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 387.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 386.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 386.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 385.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 385.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 383.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 380.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 380.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 380.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 379.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 379.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 375.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 373.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 370.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 369.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 368.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 367.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 366.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 366.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 365.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 365.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 365.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 365.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 364.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 364.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 363.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 362.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 362.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 362.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 360.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 360.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 359.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 359.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 359.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 359.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 356.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 354.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 353.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 353.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 351.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 348.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 347.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 346.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 346.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 346.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 345.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 342.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 340.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 338.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 336.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 335.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 333.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 331.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 329.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 328.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 323.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 318.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 318.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 314.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 307.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 305.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 305.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 303.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 302.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 300.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 300.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 299.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 298.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 296.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 296.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 296.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 295.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 293.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 292.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 288.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 287.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 285.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 284.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 283.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 282.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 281.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 278.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 278.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 277.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 276.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 274.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 271.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 271.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 270.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 262.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 261.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 260.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 255.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 255.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 253.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 249.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 244.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 242.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 239.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 212.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 169.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

317.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 317.6
FF:10181-103D1 60 years, female 383.5
FF:10159-103A6 76 years, female 251.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 4.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.2
Sample A Female 5.3
Sample B Female 4.5
Sample C Male 2.2
Sample D Male 4.2
Ventral spinal cord
nTPM: 5.4
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 6.9
Sample C Male 4.0
Sample D Male 6.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo