A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
7.7
nTPM
Schmiedel:
10.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
NK-cell nTPM: 10.3
Samples: 6
Max nTPM: 16.2
Min nTPM: 4.2
P10809_1013
8.1
P10809_1033
16.2
P10809_1052
8.3
P10809_1071
10.2
P10809_1093
4.2
P10809_1103
14.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.7
Monaco sample
nTPM
NK-cell nTPM: 7.8
Samples: 4
Max nTPM: 10.6
Min nTPM: 6.1
RHH5316_R3683
7.8
RHH5224_R3596
6.5
RHH5253_R3625
6.1
RHH5282_R3654
10.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.2
Schmiedel sample id
TPM
NK-cell TPM: 10.2
Samples: 90
Max TPM: 20.1
Min TPM: 3.7
NK_1
20.1
NK_2
18.9
NK_3
17.1
NK_4
17.1
NK_5
16.1
NK_6
15.7
NK_7
14.9
NK_8
14.7
NK_9
14.3
NK_10
13.8
NK_11
13.6
NK_12
13.4
NK_13
13.3
NK_14
13.2
NK_15
13.2
NK_16
12.5
NK_17
12.4
NK_18
12.4
NK_19
12.4
NK_20
12.2
NK_21
12.2
NK_22
12.1
NK_23
12.0
NK_24
12.0
NK_25
11.7
NK_26
11.4
NK_27
11.3
NK_28
11.3
NK_29
11.2
NK_30
11.1
NK_31
11.1
NK_32
11.1
NK_33
10.9
NK_34
10.7
NK_35
10.5
NK_36
10.4
NK_37
10.3
NK_38
10.2
NK_39
10.2
NK_40
10.1
NK_41
10.1
NK_42
10.1
NK_43
10.1
NK_44
10.1
NK_45
10.0
NK_46
10.0
NK_47
10.0
NK_48
9.9
NK_49
9.8
NK_50
9.7
NK_51
9.5
NK_52
9.5
NK_53
9.5
NK_54
9.4
NK_55
9.4
NK_56
9.2
NK_57
9.1
NK_58
9.1
NK_59
9.1
NK_60
9.0
NK_61
8.8
NK_62
8.7
NK_63
8.7
NK_64
8.6
NK_65
8.5
NK_66
8.3
NK_67
8.3
NK_68
8.2
NK_69
8.1
NK_70
7.8
NK_71
7.8
NK_72
7.7
NK_73
7.6
NK_74
7.5
NK_75
7.5
NK_76
7.5
NK_77
7.4
NK_78
7.0
NK_79
6.7
NK_80
6.6
NK_81
6.5
NK_82
6.0
NK_83
5.6
NK_84
5.6
NK_85
5.5
NK_86
5.3
NK_87
5.2
NK_88
5.2
NK_89
3.9
NK_90
3.7
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