BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.6 nTPM
HPA Brain:162.3 nTPM
GTEx:91.6 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Macaque:67.5 nTPM
Mouse:82.0 nTPM
Rat:90.9 nTPM
Pig:140.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 162.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.7
2586 Male, age 75, left hemisphere 162.3
2019 Male, age 18, unknown 161.0
2219 Male, age 76, both hemispheres 153.5
2666 Male, age 74, left hemisphere 152.5
1827 Male, age 72, unknown 138.3
2828 Female, age 72, unknown 128.8
2411 Female, age 72, unknown 100.6
1833 Male, age 53, unknown 91.1
1870 Female, age 42, unknown 90.3
1830 Male, age 51, unknown 88.4
Dorsal raphe nucleus
nTPM: 120.0
2047 Male, age 72, unknown 142.5
1828 Male, age 53, unknown 134.6
2298 Female, age 72, unknown 123.3
2750 Male, age 76, both hemispheres 115.8
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 111.4
1890 Male, age 53, unknown 117.1
1848 Female, age 42, unknown 114.3
2097 Female, age 72, unknown 113.0
2849 Male, age 72, unknown 101.2
Median raphe nucleus
nTPM: 144.0
2220 Male, age 76, midline 144.0
Periaquaductal grey, anterior
nTPM: 140.6
1795 Male, age 51, unknown 150.1
2502 Female, age 75, unknown 141.7
1947 Male, age 18, unknown 130.1
Periaquaductal grey, dorsal
nTPM: 101.3
1831 Male, age 72, unknown 111.2
1840 Male, age 53, unknown 105.1
2850 Male, age 76, both hemispheres 97.5
2464 Female, age 72, unknown 91.2
Periaquaductal grey, lateral
nTPM: 79.6
2140 Male, age 76, both hemispheres 85.6
2053 Male, age 18, unknown 81.8
2272 Male, age 74, both hemispheres 71.5
Pretectal area
nTPM: 147.3
2007 Male, age 72, unknown 217.7
1816 Male, age 51, unknown 214.0
1817 Female, age 42, unknown 210.3
1944 Female, age 72, unknown 201.5
2667 Female, age 75, unknown 160.0
1815 Male, age 53, unknown 158.1
2407 Male, age 75, both hemispheres 104.1
2224 Female, age 72, unknown 96.7
2825 Male, age 18, unknown 94.9
2273 Male, age 74, both hemispheres 82.7
2316 Male, age 76, right hemisphere 79.9
Red nucleus
nTPM: 100.0
2785 Male, age 18, unknown 147.0
2588 Male, age 74, left hemisphere 112.1
2584 Male, age 75, left hemisphere 112.0
1821 Female, age 72, unknown 108.1
1954 Female, age 42, unknown 101.7
2725 Female, age 75, unknown 97.9
2823 Male, age 76, right hemisphere 89.6
2769 Male, age 72, unknown 88.2
1865 Male, age 51, unknown 86.7
2503 Female, age 72, unknown 86.6
1904 Male, age 53, unknown 86.0
2227 Male, age 72, unknown 84.6
Substantia nigra
nTPM: 162.3
2665 Male, age 74, both hemispheres 262.2
1916 Female, age 42, unknown 222.4
1941 Male, age 53, unknown 205.4
1889 Female, age 72, unknown 178.8
1851 Male, age 51, unknown 172.8
2241 Male, age 72, unknown 137.3
2409 Female, age 72, unknown 125.0
2699 Male, age 18, unknown 116.1
2583 Male, age 75, right hemisphere 102.6
2590 Female, age 75, unknown 100.2
Superior colliculus
nTPM: 126.8
2664 Male, age 75, both hemispheres 191.5
2087 Female, age 72, unknown 167.2
2668 Female, age 75, unknown 161.1
1796 Male, age 53, unknown 127.3
2261 Male, age 18, unknown 126.2
1895 Male, age 76, right hemisphere 117.0
1839 Male, age 51, unknown 105.1
2587 Male, age 74, left hemisphere 103.5
1913 Female, age 42, unknown 86.0
1995 Male, age 72, unknown 82.9
Ventral tegmental area
nTPM: 128.2
2218 Male, age 76, both hemispheres 162.1
2410 Female, age 72, unknown 152.3
1915 Female, age 42, unknown 151.6
1942 Male, age 51, unknown 122.7
2021 Male, age 53, unknown 96.5
2223 Female, age 72, unknown 84.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.6
Samples: 183

Max nTPM: 345.5
Min nTPM: 10.3
Std nTPM: 54.1
Median nTPM: 83.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 345.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 270.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 242.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 234.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 208.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 205.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 203.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 199.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 190.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 179.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 176.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 67.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 42.8
Samples: 1

Max nTPM: 42.8
Min nTPM: 42.8
Sample A 42.8
Midbrain
nTPM: 45.8
Samples: 1

Max nTPM: 45.8
Min nTPM: 45.8
Sample A 45.8
Superior colliculi
nTPM: 67.5
Samples: 1

Max nTPM: 67.5
Min nTPM: 67.5
Sample A 67.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 140.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.3
Samples: 3

Max nTPM: 158.6
Min nTPM: 73.3
Sample A Female 158.6
Sample B Female 73.3
Sample C Male 153.1
Midbrain
nTPM: 140.6
Samples: 3

Max nTPM: 251.0
Min nTPM: 76.1
Sample B Female 76.1
Sample C Male 251.0
Sample D Male 94.7
Periaqueductal gray
nTPM: 74.7
Samples: 3

Max nTPM: 101.5
Min nTPM: 59.1
Sample B Female 63.6
Sample C Male 101.5
Sample D Male 59.1
Superior colliculi
nTPM: 118.5
Samples: 4

Max nTPM: 199.6
Min nTPM: 64.4
Sample A Female 109.6
Sample B Female 64.4
Sample C Male 199.6
Sample D Male 100.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.9
Samples: 4

Max nTPM: 89.9
Min nTPM: 74.1
Sample A 74.1
Sample B 83.8
Sample C 89.9
Sample D 79.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 90.9
Rat sample Sample description nTPM
Midbrain
nTPM: 90.8
Samples: 4

Max nTPM: 95.1
Min nTPM: 85.4
Sample A 93.5
Sample A 95.1
Sample A 89.3
Sample A 85.4

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